Evidence map›Paper›PMID 30072430›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Kinase-dependent structural role of DNA-PKcs during immunoglobulin class switch recombination.

Jennifer L Crowe, Zhengping Shao, Xiaobin S Wang, Pei-Chi Wei, Wenxia Jiang, Brian J Lee, Verna M Estes, Frederick W Alt, Shan Zha

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  8. Article
  9. Phosphorylation of DNA-PKcs at the S2056 cluster ensures efficient and productive lymphocyte development in XLF-deficient mice.Proceedings of the National Academy of Sciences of the United States of America · 2023
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  15. Review
  16. DNA damage-induced phosphorylation of CtIP at a conserved ATM/ATR site T855 promotes lymphomagenesis in mice.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  17. Article
  18. CtIP-mediated DNA resection is dispensable for IgH class switch recombination by alternative end-joining.Proceedings of the National Academy of Sciences of the United States of America · 2020
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  19. Review
  20. DNA-PKcs phosphorylation at the T2609 cluster alters the repair pathway choice during immunoglobulin class switch recombination.Proceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Jennifer L CroweInstitute for Cancer Genetics, Columbia University, New York, NY 10032.
Zhengping ShaoInstitute for Cancer Genetics, Columbia University, New York, NY 10032.
Xiaobin S WangInstitute for Cancer Genetics, Columbia University, New York, NY 10032.
Pei-Chi WeiHoward Hughes Medical Institute, Harvard Medical School, Boston, MA 02115.
Wenxia JiangInstitute for Cancer Genetics, Columbia University, New York, NY 10032.
Brian J LeeInstitute for Cancer Genetics, Columbia University, New York, NY 10032.
Verna M EstesInstitute for Cancer Genetics, Columbia University, New York, NY 10032.
Frederick W AltHoward Hughes Medical Institute, Harvard Medical School, Boston, MA 02115.
Shan ZhaInstitute for Cancer Genetics, Columbia University, New York, NY 10032; sz2296@columbia.edu.
Cancer Genetics (United States) · USColumbia University · USHarvard University · USHoward Hughes Medical Institute · US

Funding

The Role of CTIP in Lymphocyte Development and LymphomagenesisP01CA174653 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GAUTIER, JEAN · 2014 to 2024
$17.6M
The role of ATM in the suppression of lymphoid malignancyR01CA158073 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Shan Zha · 2011 to 2026
$5.7M
Mechanisms that Regulate Antibody Class Switch Recombination and Somatic HypermutationR37AI077595 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI Frederick W. Alt · 2019 to 2026
$4.6M
Molecular Mechanisms of Class Switch RecombinationR01AI077595 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI ALT, FREDERICK W. · 2009 to 2018
$4.3M
The structural function of ATR in development, oncogenesis and cancer therapyR01CA215067 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ZHA, SHAN · 2017 to 2021
$1.9M
DNA-PKCS Phosphorylation in DNA Repair and Chromosomal TranslocationsR01CA184187 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ZHA, SHAN · 2015 to 2019
$1.8M
Clinical and Translational Science AwardTL1TR000082 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2012 to 2015
$732k
Non-catalytic functions of DNA-PK in DNA repair and tumorigenesisF31CA183504 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CROWE, JENNIFER L · 2014 to 2016
$129k
Howard Hughes Medical InstituteNCATS NIH HHS TL1 TR000082NCI NIH HHS F31 CA183504NCI NIH HHS P01 CA174653NCI NIH HHS R01 CA158073NCI NIH HHS R01 CA184187NCI NIH HHS R01 CA215067NIAID NIH HHS R01 AI077595NIAID NIH HHS R37 AI077595
6 · The paper itself

Abstract

The catalytic subunit of DNA-dependent protein kinase (DNA-PKcs) is a classical nonhomologous end-joining (cNHEJ) factor. Loss of DNA-PKcs diminished mature B cell class switch recombination (CSR) to other isotypes, but not IgG1. Here, we show that expression of the kinase-dead DNA-PKcs (

Indexed as

AnimalsB-LymphocytesCell LineDNA-Activated Protein KinaseDNA-Binding ProteinsImmunoglobulin Class SwitchingImmunoglobulin GMiceMice, KnockoutNuclear ProteinsRecombination, GeneticDNA-Activated Protein KinaseDNA-Binding ProteinsImmunoglobulin GNuclear ProteinsPrkdc protein, mousealternative end joiningclassical nonhomologous end joiningDNA-PKcsimmunoglobulin class switch recombinationsomatic mutation

Identifiers

PMID30072430
PMCPMC6112704
OpenAlexW2887233395

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.