Evidence map›Paper›PMID 30071101›Full record

ArticlePloS one2018

Colonization efficiency of Pseudomonas putida is influenced by Fis-controlled transcription of nuoA-N operon.

Annika Teppo, Andrio Lahesaare, Hanna Ainelo, Kadri Samuel, Maia Kivisaar, Riho Teras

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Metabolic and Genomic Traits of Phytobeneficial Phenazine-ProducingApplied and environmental microbiology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Annika TeppoChair of Genetics, Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.
Andrio LahesaareChair of Genetics, Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.
Hanna AineloChair of Genetics, Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.
Kadri SamuelChair of Genetics, Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.
Maia KivisaarChair of Genetics, Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.
Riho TerasChair of Genetics, Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.ORCID 0000-0001-8531-6888
University of Tartu · EE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Root colonization of plant growth-promoting bacteria is a complex multistep process that is influenced by several factors. For example, during adherence to plant roots, bacteria have to endure reactive oxygen species (ROS) produced by plants. In this study, we report that the global transcriptional regulator Fis is involved in the regulation of ROS-tolerance of Pseudomonas putida and thereby affects barley root colonization. Fis overexpression reduced both ROS-tolerance and adherence to barley roots and activated the transcription of the nuoA-N operon encoding NADH dehydrogenase I, the first enzyme of a membrane-bound electron-transport chain. The nuoA-N knockout mutation in the fis-overexpression background increased the ROS-tolerance and adherence to barley roots. We show that nuoA has two transcriptional start sites located 104 and 377 nucleotides upstream of the coding sequence, indicating the presence of two promoters. The DNase I footprint analysis revealed four Fis binding sites: Fis-nuo1 to Fis-nuo4, situated between these two promoters. Site-directed mutagenesis in a promoter-lacZ reporter and β-galactosidase assay further confirmed direct binding of Fis to Fis-nuo2 and probably to Fis-nuo4 but not to Fis-nuo1 and Fis-nuo3. Additionally, the results implied that Fis binding to Fis-nuo4 could affect transcription of the nuoA-N operon by modification of upstream DNA topology. Moreover, our transposon mutagenesis results indicated that Fis might be involved in the regulation of several alternative ROS detoxification processes utilizing NADH.

Indexed as

OperonTranscription, Geneticbeta-GalactosidaseBinding SitesComputer SimulationFactor For Inversion Stimulation ProteinGene Expression Regulation, BacterialHordeumModels, GeneticMutagenesis, Site-DirectedPlant RootsPromoter Regions, GeneticPseudomonas putidaReactive Oxygen SpeciesRNA, MessengerSeedlingsbeta-GalactosidaseFactor For Inversion Stimulation ProteinReactive Oxygen SpeciesRNA, Messenger

Identifiers

PMID30071101
PMCPMC6072106
OpenAlexW2887753679

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.