Evidence map›Paper›PMID 30071027›Full record

ArticlePloS one2018

Jailed in the mountains: Genetic diversity and structure of an endemic newt species across the Pyrenees.

Emilio Valbuena-Ureña, Neus Oromi, Anna Soler-Membrives, Salvador Carranza, Fèlix Amat, Sebastià Camarasa, Mathieu Denoël, Olivier Guillaume, Delfí Sanuy, Adeline Loyau and 2 more

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Journal of fungi (Basel, Switzerland) · 2021
    Article
  4. Evaluating surrogates of genetic diversity for conservation planning.Conservation biology : the journal of the Society for Conservation Biology · 2021
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Emilio Valbuena-UreñaUnitat de Zoologia, Facultat de Biociències, Universitat Autònoma de Barcelona, Cerdanyola del Vallès (Barcelona), Catalonia, Spain.ORCID 0000-0002-3860-9933
Neus OromiDepartament de Ciència Animal (Fauna Silvestre), Universitat de Lleida, Lleida, Catalonia, Spain.
Anna Soler-MembrivesUnitat de Zoologia, Facultat de Biociències, Universitat Autònoma de Barcelona, Cerdanyola del Vallès (Barcelona), Catalonia, Spain.ORCID 0000-0002-6543-8367
Salvador CarranzaInstitute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra), Barcelona, Spain.
Fèlix AmatÀrea d'Herpetologia, Museu de Granollers, Ciències Naturals, Granollers, Catalonia, Spain.
Sebastià CamarasaDepartament de Ciència Animal (Fauna Silvestre), Universitat de Lleida, Lleida, Catalonia, Spain.
Mathieu DenoëlLaboratory of Fish and Amphibian Ethology, Behavioural Biology Group, Freshwater and OCeanic science Unit of reSearch (FOCUS), University of Liège, Liège, Belgium.
Olivier GuillaumeStation d'Ecologie Théorique et Expérimentale CNRS-Université de Toulouse, Moulis, France.
Delfí SanuyDepartament de Ciència Animal (Fauna Silvestre), Universitat de Lleida, Lleida, Catalonia, Spain.
Adeline LoyauHelmholtz Centre for Environmental Research-UFZ, Department of Conservation Biology, Leipzig, Germany.
Dirk S SchmellerHelmholtz Centre for Environmental Research-UFZ, Department of Conservation Biology, Leipzig, Germany.
Sebastian SteinfartzZoological Institute, Department of Evolutionary Biology, Unit of Molecular Ecology, Technische Universität Braunschweig, Braunschweig, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Pyrenees represent a natural laboratory for biogeographic, evolutionary and ecological research of mountain fauna as a result of the high variety of habitats and the profound effect of the glacial and interglacial periods. There is a paucity of studies providing a detailed insight into genetic processes and better knowledge on the patterns of genetic diversity and how they are maintained under high altitude conditions. This is of particular interest when considering the course of past climate conditions and glaciations in a species which is considered site tenacious, with long generation times. Here we analyzed the genetic patterns of diversity and structure of the endemic Pyrenean brook newt (Calotriton asper) along its distribution range, with special emphasis on the distinct habitat types (caves, streams, and lakes), and the altitudinal and geographical ranges, using a total set of 900 individuals from 44 different localities across the Pyrenean mountain range genotyped for 19 microsatellite loci. We found evidence for a negative longitudinal and positive altitudinal gradient of genetic diversity in C. asper populations. The fact that genetic diversity was markedly higher westwards is in accordance with other Pyrenean species. However, the impact of altitudinal gradient on the genetic diversity seems to differ from other species, and mostly from other amphibians. We found that lower altitudes can act as a barrier probably because the lowlands do not provide a suitable habitat for C. asper. Regarding the distinct habitat types, caves had significantly lower values of genetic diversity compared to streams or lakes. The mean FST value was relatively high (0.304) with maximum values as high as 0.771, suggesting a highly structured total population. Indeed, populations were grouped into five subclusters, the eastern populations (cluster 1) remained grouped into two subclusters and the central-western Pyrenees (cluster 2) into three subclusters. The increase of isolation with geographical distance is consistent with the population structure detected. In conclusion, C. asper seems to be adapted to high altitude mountain habitats, and its genetic diversity is higher in the western Pyrenees. In terms of conservation priority, we consider more relevant the populations that represent a reservoir of genetic diversity.

Indexed as

Genetic VariationAllelesAnimalsCluster AnalysisEcosystemGenotypeLinear ModelsLinkage DisequilibriumMicrosatellite RepeatsPrincipal Component AnalysisSalamandridae

Identifiers

PMID30071027
PMCPMC6071966

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.