Evidence map›Paper›PMID 30069670›Full record

ArticleVirus genes2018

Full genome sequence of a Sathuvachari virus strain isolated in the southwestern-most archipelago of Japan.

Tomoko Kato, Maki Aizawa, Katsunori Takayoshi, Tohru Yanase, Shogo Tanaka, Hiroaki Shirafuji, Makoto Yamakawa

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Virus genes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tomoko KatoKyushu Research Station, National Institute of Animal Health, NARO, 2702, Chuzan, Kagoshima, Kagoshima, Japan.
Maki AizawaOkinawa Prefectural Institute of Animal Health, Uruma, Okinawa, Japan.
Katsunori TakayoshiOkinawa Prefectural Institute of Animal Health, Uruma, Okinawa, Japan.
Tohru YanaseKyushu Research Station, National Institute of Animal Health, NARO, 2702, Chuzan, Kagoshima, Kagoshima, Japan. tyanase@affrc.go.jp.
Shogo TanakaKyushu Research Station, National Institute of Animal Health, NARO, 2702, Chuzan, Kagoshima, Kagoshima, Japan.
Hiroaki ShirafujiKyushu Research Station, National Institute of Animal Health, NARO, 2702, Chuzan, Kagoshima, Kagoshima, Japan.
Makoto YamakawaKyushu Research Station, National Institute of Animal Health, NARO, 2702, Chuzan, Kagoshima, Kagoshima, Japan. yamato@affrc.go.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two virus strains, tentatively designated as ON-6/P/05 and ON-7/E/05, were isolated from blood samples of healthy cattle in the Yaeyama Islands, located in the southwestern-most region of Japan, in 2005. Ultrastructural observations of infected baby hamster (BHK-21) cells revealed that the viruses had features consistent with those of orbivirus. As with other orbiviruses, the viral genome consists of 10 double-stranded RNA segments. The full genome sequence of ON-6/P/05 was determined and shared high nucleotide and amino acid identities (90.07-98.22% nucleotide identity; 96.16-99.72% amino acid identity) with that of Sathuvachari virus (SVIV), a member of the species Sathuvachari virus of the genus Orbivirus, originally isolated from starlings collected in southern India in 1963. The sequence of segment two of ON-7/E/05 was identical to that of ON-6/P/05. The isolation of SVIV from cattle also indicated that the virus has a wider host range than previously thought. The potential pathogenicity of SVIV in domestic animals should be considered in future disease surveillance within its distribution range.

Indexed as

Genome, ViralAnimalsCattleCell LineCricetinaeFemaleJapanMolecular TypingOrbivirusSpecies SpecificityArbovirusBos taurusMosquito-borneOrbivirusReoviridae

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.