Evidence map›Paper›PMID 30068980›Full record

ArticleNature communications2018

High protein copy number is required to suppress stochasticity in the cyanobacterial circadian clock.

Justin Chew, Eugene Leypunskiy, Jenny Lin, Arvind Murugan, Michael J Rust

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Fast, StreamlinedChemical & biomedical imaging · 2026
    Article
  3. The Phenotypic Landscape of a Circadian Clock.bioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Circadian clock proteins KaiB and Rbp2 ofMicrobiology spectrum · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. The cyanobacterial circadian clock.Npj biological timing and sleep · 2025
    Review
  11. Frontiers in cell and developmental biology · 2025
    Review
  12. The inner workings of an ancient biological clock.Trends in biochemical sciences · 2024
    Review
  13. Review
  14. Article
  15. Circadian rhythms in infectious diseases and symbiosis.Seminars in cell & developmental biology · 2022
    Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Justin ChewMedical Scientist Training Program, Pritzker School of Medicine, University of Chicago, 900 E 57th St, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0003-4749-547X
Eugene LeypunskiyGraduate Program in Biophysical Sciences, University of Chicago, 900 E 57th St, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0002-3335-1099
Jenny LinDepartment of Biochemistry and Molecular Biology, University of Chicago, 900 E 57th St, Chicago, IL, 60637, USA.
Arvind MuruganDepartment of Physics, University of Chicago, 900 E 57th St, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0001-5464-917X
Michael J RustDepartment of Physics, University of Chicago, 900 E 57th St, Chicago, IL, 60637, USA. mrust@uchicago.edu.
University of Chicago · US

Funding

MEDICAL SCIENTIST TRAININGT32GM007281 · NIGMS · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 1985 to 2022
$32.1M
ULTRASTRUCTURE AND CYTOMORPHOLOGY COREP30DK042086 · NIDDK · UNIVERSITY OF CHICAGO · PI ABADIE, VALERIE · 1990 to 2025
$29.8M
Coupling between Circadian Rhythms and Metaboilsm in CyanobacteriaR01GM107369 · NIGMS · UNIVERSITY OF CHICAGO · PI RUST, MICHAEL · 2013 to 2017
$1.5M
Investigating the Effects of Molecular Noise on Cyanobacterial Circadian Clock Function by Varying Kai Protein Copy NumberF30GM117962 · NIGMS · UNIVERSITY OF CHICAGO · PI CHEW, JUSTIN · 2017 to 2018
$96k
NIDDK NIH HHS P30 DK042086NIGMS NIH HHS F30 GM117962NIGMS NIH HHS R01 GM107369NIGMS NIH HHS T32 GM007281
6 · The paper itself

Abstract

Circadian clocks generate reliable ~24-h rhythms despite being based on stochastic biochemical reactions. The circadian clock in Synechococcus elongatus uses a post-translational oscillator that cycles deterministically in a test tube. Because the volume of a single bacterial cell is much smaller than a macroscopic reaction, we asked how clocks in single cells function reliably. Here, we show that S. elongatus cells must express many thousands of copies of Kai proteins to effectively suppress timing errors. Stochastic modeling shows that this requirement stems from noise amplification in the post-translational feedback loop that sustains oscillations. The much smaller cyanobacterium Prochlorococcus expresses only hundreds of Kai protein copies and has a simpler, hourglass-like Kai system. We show that this timer strategy can outperform a free-running clock if internal noise is significant. This conclusion has implications for clock evolution and synthetic oscillator design, and it suggests hourglass-like behavior may be widespread in microbes.

Indexed as

Circadian ClocksGene DosageBacterial ProteinsFeedbackProchlorococcusStochastic ProcessesSynechococcusBacterial Proteins

Identifiers

PMID30068980
PMCPMC6070526
OpenAlexW2884631345

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.