Evidence map›Paper›PMID 30068567›Full record

ArticleOpen biology2018

Implications of dimeric activation of PDE6 for rod phototransduction.

Trevor D Lamb, Martin Heck, Timothy W Kraft

Open access · goldAbstract read
In one paragraph

Article in Open biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. New focus on regulation of the rod photoreceptor phosphodiesterase.Current opinion in structural biology · 2021
    Review
  5. Article
  6. Article
  7. Novel mutations inInternational journal of ophthalmology · 2021
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Reply to Heck et al.: Signal amplification at the rhodopsin-to-transducin·phosphodiesterase step in rod phototransduction.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Phototransduction gain at the G-protein, transducin, and effector protein, phosphodiesterase-6, stages in retinal rods.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  14. Elementary response triggered by transducin in retinal rods.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 3 countries.

Trevor D LambEccles Institute of Neuroscience, John Curtin School of Medical Research, The Australian National University, Australian Capital Territory 2600, Australia trevor.lamb@anu.edu.au.ORCID 0000-0003-0299-6115
Martin HeckInstitut für Medizinische Physik und Biophysik der Charité, Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Berlin, Germany.ORCID 0000-0003-0847-5038
Timothy W KraftDepartment of Optometry and Vision Science, University of Alabama at Birmingham, Birmingham, AL, USA.
Australian National University · AUHumboldt-Universität zu Berlin · DEUniversity of Alabama at Birmingham · US

Funding

Short Term Adaptations in PhotoreceptorsR01EY023603 · NEI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KRAFT, TIMOTHY W, SINCICH, LAWRENCE C · 2014 to 2022
$3.1M
NEI NIH HHS R01 EY023603NIH HHS R01EY023603
6 · The paper itself

Abstract

We examine the implications of a recent report providing evidence that two transducins must bind to the rod phosphodiesterase to elicit significant hydrolytic activity. To predict the rod photoreceptor's electrical response, we use numerical simulation of the two-dimensional diffusional contact of interacting molecules at the surface of the disc membrane, and then we use the simulated PDE activity as the driving function for the downstream reaction cascade. The results account for a number of aspects of rod phototransduction that have previously been puzzling. For example, they explain the existence of a greater initial delay in rods than in cones. Furthermore, our analysis suggests that the 'continuous' noise recorded in rods in darkness is likely to arise from spontaneous activation of individual molecules of PDE at a rate of a few tens per second per rod, probably as a consequence of spontaneous activation of transducins at a rate of thousands per second per rod. Hence, the dimeric activation of PDE in rods provides immunity against spontaneous transducin activation, thereby reducing the continuous noise. Our analysis also provides a coherent quantitative explanation of the amplification underlying the single photon response. Overall, numerical analysis of the dimeric activation of PDE places rod phototransduction in a new light.

Indexed as

Light Signal TransductionAnimalsComputer SimulationCyclic Nucleotide Phosphodiesterases, Type 6Enzyme ActivationHumansMammalsRetinal Rod Photoreceptor CellsTransducinCyclic Nucleotide Phosphodiesterases, Type 6Transducindimeric activationphosphodiesterase PDE6phototransductionresponse kineticsrod photoreceptorstransducin

Identifiers

PMID30068567
PMCPMC6119862
OpenAlexW2886833630

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.