ArticlePloS one2018
Genome-wide identification and expression profiling of the auxin response factor (ARF) gene family in physic nut.
Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
17 citing papers in PubMed, 51 citations in OpenAlex.
- Identification of ARF gene family and functional analysis of CqARF05 under drought and salt stress in quinoa.Scientific reports · 2025Article
- Systematic analysis of the ARF gene family in Fagopyrum dibotrys and its potential roles in stress tolerance.Genetica · 2024Article
- ThePhysiology and molecular biology of plants : an international journal of functional plant biology · 2024Article
- Genomic survey and expression analysis of LcARFs reveal multiple functions to somatic embryogenesis in Liriodendron.BMC plant biology · 2024Article
- Genome-Wide Identification and Expression Analysis of Auxin Response Factor (ARF) Gene Family inPlants (Basel, Switzerland) · 2023Article
- Genome-wide investigation of ARF transcription factor gene family and its responses to abiotic stress in Coix (Coix lacryma-jobi L.).Protoplasma · 2023Article
- The Knockdown ofPlants (Basel, Switzerland) · 2023Article
- The Identification and Expression Analysis of theInternational journal of molecular sciences · 2022Article
- Systematic Identification and Expression Analysis of the Auxin Response Factor (ARF) Gene Family inInternational journal of molecular sciences · 2022Article
- Identification of ARF family in blueberry and its potential involvement of fruit development and pH stress response.BMC genomics · 2022Article
- Article
- Genome-Wide Identification of thePlants (Basel, Switzerland) · 2020Article
- Down Regulation and Loss ofGenes · 2020Article
- Auxin Response Factor 2A Is Part of the Regulatory Network Mediating Fruit Ripening Through Auxin-Ethylene Crosstalk in Durian.Frontiers in plant science · 2020Article
- Genome-wide sequence identification and expression analysis of ARF family in sugar beet (PeerJ · 2020Article
- Genome-Wide Identification and Comparative Analysis ofFrontiers in genetics · 2020Article
- Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
10 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Auxin response factors (ARF) are important transcription factors which mediate the transcription of auxin responsive genes by binding directly to auxin response elements (AuxREs) found in the promoter regions of these genes. To date, no information has been available about the genome-wide organization of the ARF transcription factor family in physic nut. In this study, 17 ARF genes (JcARFs) are identified in the physic nut genome. A detailed investigation into the physic nut ARF gene family is performed, including analysis of the exon-intron structure, conserved domains, conserved motifs, phylogeny, chromosomal locations, potential small RNA targets and expression profiles under various conditions. Phylogenetic analysis suggests that the 17 JcARF proteins are clustered into 6 groups, and most JcARF proteins from the physic nut reveal closer relationships with those from Arabidopsis than those from rice. Of the 17 JcARF genes, eight are predicted to be the potential targets of small RNAs; most of the genes show differential patterns of expression among four tissues (root, stem cortex, leaf, and seed); and qRT-PCR indicates that the expression of all JcARF genes is inhibited or induced in response to exogenous auxin. Expression profile analysis based on RNA-seq data shows that in leaves, 11 of the JcARF genes respond to at least one abiotic stressor (drought and/or salinity) at, as a minimum, at least one time point. Our results provide valuable information for further studies on the roles of JcARF genes in regulating physic nut's growth, development and responses to abiotic stress.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.