Evidence map›Paper›PMID 30066941›Full record

ArticleOncology reports2018

CLEC3B is downregulated and inhibits proliferation in clear cell renal cell carcinoma.

Jian Liu, Zhe Liu, Qun Liu, Lina Li, Xiaona Fan, Tao Wen, Guangyu An

Open access · hybridAbstract read
In one paragraph

Article in Oncology reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 38 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jian LiuMedical Research Center, Beijing Chao‑Yang Hospital, Capital Medical University, Beijing 100020, P.R. China.
Zhe LiuDepartment of Oncology, Beijing Chao‑Yang Hospital, Capital Medical University, Beijing 100020, P.R. China.
Qun LiuDepartment of Obstetrics and Gynecology, Beijing Anzhen Hospital, Capital Medical University, Beijing 100029, P.R. China.
Lina LiMedical Research Center, Beijing Chao‑Yang Hospital, Capital Medical University, Beijing 100020, P.R. China.
Xiaona FanMedical Research Center, Beijing Chao‑Yang Hospital, Capital Medical University, Beijing 100020, P.R. China.
Tao WenMedical Research Center, Beijing Chao‑Yang Hospital, Capital Medical University, Beijing 100020, P.R. China.
Guangyu AnDepartment of Oncology, Beijing Chao‑Yang Hospital, Capital Medical University, Beijing 100020, P.R. China.
Capital Medical University · CNBeijing Chao-Yang Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dysregulation of C‑Type Lectin Domain Family 3 Member B (CLEC3B) in serum or tumor tissues has been reported in patients with various cancer types. However, the expression and function of CLEC3B in clear cell renal cell carcinoma (ccRCC) remain unknown. To examine the function of CLEC3B in ccRCC, The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases were examined to determine the expression of CLEC3B at the transcriptional level and it was demonstrated that CLEC3B mRNA was significantly downregulated in ccRCC compared with normal tissues (P<0.0001 and P=0.0392 in TCGA and GEO databases, respectively). The downregulation of CLEC3B was further validated at the protein level in 78.9% of ccRCCs by immunohistochemistry. To investigate the potential genetic mechanism for CLEC3B downregulation in ccRCC, copy number analysis was performed by profiling the copy number variation data from the TCGA project and it was revealed that the copy number loss of CLEC3B was prevalent in up to 88.1% of patients with ccRCC. CLEC3B genetic deletion was coupled with the well‑known genetic loss of the von Hippel‑Lindau tumor suppressor, which is a characteristic oncogenic event during ccRCC carcinogenesis. The downregulation of CLEC3B was associated with tumor progression and predicted unfavorable prognostic outcomes in the TCGA cohort. Real‑time cell analyzer system technology revealed that CLEC3B inhibited the proliferation of ccRCC cell lines in vitro and that the mitogen‑activated protein kinase pathway may contribute to this process. CLEC3B demonstrated substantial positive associations with proliferation inhibitors, but inverse associations with proliferation inducers and markers in two large ccRCC cohorts, suggesting that CLEC3B was able to identify ccRCCs with a lower proliferation capacity. In conclusion, the results of the present study propose that CLEC3B is a promising target for therapeutic intervention in ccRCC.

Indexed as

Cell ProliferationGene Expression Regulation, NeoplasticAdultAgedAged, 80 and overApoptosisBiomarkers, TumorCarcinoma, Renal CellCase-Control StudiesDatabases, FactualDNA Copy Number VariationsDown-RegulationFemaleFollow-Up StudiesHumansKidney NeoplasmsBiomarkers, TumorLectins, C-Typetetranectin

Identifiers

PMID30066941
PMCPMC6111577
OpenAlexW2883492332

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.