Evidence map›Paper›PMID 30065243›Full record

ArticleNature communications2018

Systems analysis of intracellular pH vulnerabilities for cancer therapy.

Erez Persi, Miquel Duran-Frigola, Mehdi Damaghi, William R Roush, Patrick Aloy, John L Cleveland, Robert J Gillies, Eytan Ruppin

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 193 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
193citing papers in PubMed, 3 pooled it
14.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

193 citing papers in PubMed, 3 syntheses or guidelines pooled it, 408 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Review
  5. Article
  6. Hyperpolarization of PyridineAngewandte Chemie (International ed. in English) · 2026
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  20. Stimuli-Responsive Supramolecular Biomaterials for Cancer Theranostics.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review

133 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 7 institutions in 3 countries.

Erez PersiSchool of Physics and Astronomy, Raymond & Beverly Sackler Faculty of Exact Sciences, Tel-Aviv University, 69978, Tel-Aviv, Israel. erezpersi@gmail.com.
Miquel Duran-FrigolaJoint IRB-BSC-CRG Program in Computational Biology, Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, 08028, Catalonia, Spain.
Mehdi DamaghiDepartment of Cancer Physiology, Moffitt Cancer Center and Research Institute, Tampa, FL, 33612, USA.
William R RoushDepartment of Chemistry, The Scripps Research Institute, 110 Scripps Way, Jupiter, 33458, USA.
Patrick AloyJoint IRB-BSC-CRG Program in Computational Biology, Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, 08028, Catalonia, Spain.
John L ClevelandDepartment of Tumor Biology, Moffitt Cancer Center & Research Institute, Tampa, FL, 33612, USA.
Robert J GilliesDepartment of Cancer Physiology, Moffitt Cancer Center and Research Institute, Tampa, FL, 33612, USA.ORCID http://orcid.org/0000-0002-8888-7747
Eytan RuppinCancer Data Science Lab, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, 20894, USA. eyruppin@gmail.com.
Moffitt Cancer Center · USInstitució Catalana de Recerca i Estudis Avançats · ESInstitute for Research in Biomedicine · ESNational Institutes of Health · USScripps Research Institute · USTel Aviv University · ILUniversity of South Florida · US

Funding

TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI KENNETH Lynn WRIGHT · 1998 to 2026
$93.5M
Discovery of genetic interactions in cancerZIABC011802 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI RUPPIN, EYTAN · 2018 to 2025
$19.6M
"Research Supplement to Promote Diversity in Health-Related Research", as part of Moffitt PS-OC, "Cancer as a Complex adaptive System"U54CA193489 · NCI · H. LEE MOFFITT CANCER CTR & RES INST · PI ANDERSON, ALEXANDER ROBERTSON ALLAN, GATENBY, ROBERT A · 2015 to 2020
$12.5M
Targeting Slc16a/Mct Lactate Transporters in Cancer TherapeuticsR01CA154739 · NCI · SCRIPPS FLORIDA · PI CLEVELAND, JOHN L., ROUSH, WILLIAM R · 2012 to 2016
$3.5M
NCI NIH HHS P30 CA076292NCI NIH HHS R01 CA154739NCI NIH HHS U54 CA193489
6 · The paper itself

Abstract

A reverse pH gradient is a hallmark of cancer metabolism, manifested by extracellular acidosis and intracellular alkalization. While consequences of extracellular acidosis are known, the roles of intracellular alkalization are incompletely understood. By reconstructing and integrating enzymatic pH-dependent activity profiles into cell-specific genome-scale metabolic models, we develop a computational methodology that explores how intracellular pH (pHi) can modulate metabolism. We show that in silico, alkaline pHi maximizes cancer cell proliferation coupled to increased glycolysis and adaptation to hypoxia (i.e., the Warburg effect), whereas acidic pHi disables these adaptations and compromises tumor cell growth. We then systematically identify metabolic targets (GAPDH and GPI) with predicted amplified anti-cancer effects at acidic pHi, forming a novel therapeutic strategy. Experimental testing of this strategy in breast cancer cells reveals that it is particularly effective against aggressive phenotypes. Hence, this study suggests essential roles of pHi in cancer metabolism and provides a conceptual and computational framework for exploring pHi roles in other biomedical domains.

Indexed as

Systems AnalysisComputer SimulationGlycolysisHumansHydrogen-Ion ConcentrationIntracellular SpaceMCF-7 CellsModels, BiologicalNeoplasmsReproducibility of Results

Identifiers

PMID30065243
PMCPMC6068141
OpenAlexW2883266145

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.