Evidence map›Paper›PMID 30063822›Full record

ArticleACS chemical biology2018

Paramagnetic Tag for Glycosylation Sites in Glycoproteins: Structural Constraints on Heparan Sulfate Binding to Robo1.

Maria J Moure, Alexander Eletsky, Qi Gao, Laura C Morris, Jeong-Yeh Yang, Digantkumar Chapla, Yuejie Zhao, Chengli Zong, I Jonathan Amster, Kelley W Moremen and 2 more

Abstract read
In one paragraph

Article in ACS chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Glycan structures and their interactions with proteins. A NMR view.Current opinion in structural biology · 2020
    Review
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Maria J Moure
Alexander Eletsky
Qi Gao
Laura C Morris
Jeong-Yeh Yang
Digantkumar Chapla
Yuejie Zhao
Chengli Zong
I Jonathan AmsterORCID 0000-0001-7523-5144
Kelley W Moremen
Geert-Jan BoonsDepartment of Chemical Biology and Drug Discovery, Utrecht Institute for Pharmaceutical Sciences, and Bijvoet Center for Biomolecular Research , Utrecht University , Utrecht , The Netherlands.ORCID 0000-0003-3111-5954
James H PrestegardORCID 0000-0002-1602-4790

Funding

TR&D3. Approaches to Proteoglycan Function at Biochemical and Cellular LevelsP41GM103390 · NIGMS · UNIVERSITY OF GEORGIA · PI MOREMEN, KELLEY W. · 2012 to 2019
$14.5M
Recombinant Production of Glycosylation Enzymes for Biochem/Structural StudiesP01GM107012 · NIGMS · UNIVERSITY OF GEORGIA · PI MOREMEN, KELLEY · 2013 to 2017
$7.5M
Electronics Consoles for Biomolecular NMRS10RR027097 · NCRR · UNIVERSITY OF GEORGIA · PI URBAUER, JEFFREY L · 2011 to 2011
$364k
NCRR NIH HHS S10 RR027097NIGMS NIH HHS P01 GM107012NIGMS NIH HHS P41 GM103390
6 · The paper itself

Abstract

An enzyme- and click chemistry-mediated methodology for the site-specific nitroxide spin labeling of glycoproteins has been developed and applied. The procedure relies on the presence of single N-glycosylation sites that are present natively in proteins or that can be engineered into glycoproteins by mutational elimination of all but one glycosylation site. Recombinantly expressing glycoproteins in HEK293S (GnT1-) cells results in N-glycans with high-mannose structures that can be processed to leave a single GlcNAc residue. This can in turn be modified by enzymatic addition of a GalNAz residue that is subject to reaction with an alkyne-carrying TEMPO moiety using copper(I)-catalyzed click chemistry. To illustrate the procedure, we have made an application to a two-domain construct of Robo1, a protein that carries a single N-glycosylation site in its N-terminal domains. The construct has also been labeled with

Indexed as

Click ChemistryCyclic N-OxidesElectron Spin Resonance SpectroscopyGlycoproteinsGlycosylationHEK293 CellsHeparan SulfateHumansLigandsMolecular Docking SimulationNerve Tissue ProteinsNuclear Magnetic Resonance, BiomolecularProtein BindingReceptors, ImmunologicRoundabout ProteinsCyclic N-OxidesGlycoproteinsHeparan SulfateLigandsNerve Tissue ProteinsReceptors, ImmunologicRoundabout ProteinsTEMPO

Identifiers

PMID30063822
PMCPMC6161356

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.