Evidence map›Paper›PMID 30062985›Full record

ArticleMicrobiology (Reading, England)2018

Defining the regulatory mechanism of NikR, a nickel-responsive transcriptional regulator, in Brucella abortus.

James A Budnick, Evymarie Prado-Sanchez, Clayton C Caswell

Abstract read
In one paragraph

Article in Microbiology (Reading, England), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

James A BudnickDepartment of Biomedical Sciences and Pathobiology, Center for One Health Research, VA-MD College of Veterinary Medicine, Virginia Tech, Blacksburg, VA 24060, USA.
Evymarie Prado-SanchezDepartment of Biomedical Sciences and Pathobiology, Center for One Health Research, VA-MD College of Veterinary Medicine, Virginia Tech, Blacksburg, VA 24060, USA.
Clayton C CaswellDepartment of Biomedical Sciences and Pathobiology, Center for One Health Research, VA-MD College of Veterinary Medicine, Virginia Tech, Blacksburg, VA 24060, USA.

Funding

Characterization of a novel genetic pathway required for Brucella virulenceR15AI117648 · NIAID · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI CASWELL, CLAYTON C · 2015 to 2015
$459k
NIAID NIH HHS R15 AI117648
6 · The paper itself

Abstract

Metals are essential micronutrients for virtually all forms of life, but metal acquisition is a double-edged sword, because high concentrations of divalent cations can be toxic to the cell. Therefore, the genes involved in metal acquisition, storage and efflux are tightly regulated. The present study characterizes a nickel-responsive transcriptional regulator in the intracellular mammalian pathogen, Brucella abortus. Deletion of bab2_0432 (nikR) in B. abortus led to alterations in the nickel-responsive expression of the genes encoding the putative nickel importer NikABCDE and, moreover, NikR binds directly to a specific DNA sequence within the promoter region of nikA in a metal-dependent manner to control gene expression. While NikR is involved in controlling the expression of nikA, nikR is not required for the infection of macrophages or mice by B. abortus. Overall, this work characterizes the role of NikR in nickel-responsive gene expression, as well as the dispensability of nikR for Brucella virulence.

Indexed as

Gene Expression Regulation, BacterialAnimalsATP-Binding Cassette TransportersBacterial ProteinsBiological TransportBrucella abortusDNA-Binding ProteinsMice, Inbred BALB CMutationNickelPromoter Regions, GeneticRepressor ProteinsATP-Binding Cassette TransportersBacterial ProteinsDNA-Binding ProteinsNickelRepressor ProteinsBrucellanickel-responsive regulatorNikR

Identifiers

PMID30062985
PMCPMC6600342

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.