Evidence map›Paper›PMID 30062407›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2018

Characterization of Genetically Encoded FRET Biosensors for Rho-Family GTPases.

Sara K Donnelly, Veronika Miskolci, Alice M Garrastegui, Dianne Cox, Louis Hodgson

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sara K DonnellyDepartment of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, NY, USA.
Veronika MiskolciDepartment of Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, WI, USA.
Alice M GarrasteguiDepartment of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, NY, USA.
Dianne CoxDepartment of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, NY, USA. Dianne.cox@einstein.yu.edu.
Louis HodgsonDepartment of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, NY, USA. Louis.hodgson@einstein.yu.edu.

Funding

Tumor Progression and MetastasisP01CA100324 · NCI · YESHIVA UNIVERSITY · PI CONDEELIS, JOHN S · 2003 to 2018
$30.0M
TRAINING PROGRAM IN CELLULAR &MOLEC. BIOLOGY &GENETICST32GM007491 · NIGMS · YESHIVA UNIVERSITY · PI QUERY, CHARLES C · 1985 to 2021
$17.0M
Bronx-Einstein Training in Teaching and Research (BETTR), an IRACDA programK12GM102779 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI Dianne Cox, Johanna Patricia Daily · 2012 to 2026
$9.2M
THE ROLE OF CSF-1 MEDIATED MACROPHAGE CHEMOTAXIS IN CARCINOMA CELL INVASIONR01GM071828 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI COX, DIANNE · 2006 to 2014
$2.9M
Roles of formins in breast cancer invasionR21CA205262 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI HODGSON, LOUIS · 2016 to 2017
$400k
NCI NIH HHS P01 CA100324NCI NIH HHS R21 CA205262NIGMS NIH HHS K12 GM102779NIGMS NIH HHS R01 GM071828NIGMS NIH HHS T32 GM007491
6 · The paper itself

Abstract

Genetically encoded FRET-based biosensors are increasingly popular and useful tools for examining signaling pathways with high spatial and temporal resolution in living cells. Here, we show basic techniques used to characterize and to validate single-chain, genetically encoded Förster resonance energy transfer (FRET) biosensors of the Rho GTPase-family proteins. Methods described here are generally applicable to other genetically encoded FRET-based biosensors by modifying the tested conditions to include additional/different regulators and inhibitors, as appropriate for the specific protein of interest.

Indexed as

AnimalsBiosensing TechniquesFluorescence Resonance Energy TransferMiceRAW 264.7 Cellsrho GTP-Binding Proteinsrho GTP-Binding ProteinsBiosensorsFluorometryFRETRatiometric analysisRho GTPasesValidation

Identifiers

PMID30062407
PMCPMC6104821

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.