Evidence map›Paper›PMID 30061749›Full record

ArticleNature plants2018

Minimum requirements for changing and maintaining endodermis cell identity in the Arabidopsis root.

Colleen Drapek, Erin E Sparks, Peter Marhavy, Isaiah Taylor, Tonni G Andersen, Jessica H Hennacy, Niko Geldner, Philip N Benfey

Abstract read
In one paragraph

Article in Nature plants, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Review
  2. Article
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  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Suberin Biosynthesis, Assembly, and Regulation.Plants (Basel, Switzerland) · 2022
    Review
  16. Review
  17. Article
  18. Review
  19. BAM1/2 receptor kinase signaling drives CLE peptide-mediated formative cell divisions inProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Colleen DrapekBiology Department, Duke University, Durham, NC, USA.
Erin E SparksDepartment of Plant and Soil Sciences, University of Delaware, Newark, DE, USA.
Peter MarhavyDepartment of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland.
Isaiah TaylorBiology Department, Duke University, Durham, NC, USA.
Tonni G AndersenDepartment of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland.
Jessica H HennacyBiology Department, Duke University, Durham, NC, USA.
Niko GeldnerDepartment of Plant Molecular Biology, University of Lausanne, Lausanne, Switzerland.
Philip N BenfeyBiology Department, Duke University, Durham, NC, USA. philip.benfey@duke.edu.ORCID http://orcid.org/0000-0001-5302-758X

Funding

Training Program in Developmental & Stem Cell BiologyT32HD040372 · NICHD · DUKE UNIVERSITY · PI Terry H Lechler · 2001 to 2026
$8.9M
MOLECULAR GENETIC ANALYSIS OF ROOT MORPHOGENESISR01GM043778 · NIGMS · ROCKEFELLER UNIVERSITY · PI BENFEY, PHILIP N · 1991 to 2017
$5.4M
Data commons for 'omic, microscopy and analysis core facilitiesS10OD018164 · OD · DUKE UNIVERSITY · PI WRAY, GREGORY A. · 2014 to 2014
$598k
NICHD NIH HHS T32 HD040372NIGMS NIH HHS R01 GM043778NIH HHS S10 OD018164
6 · The paper itself

Abstract

Changes in gene regulation during differentiation are governed by networks of transcription factors. The Arabidopsis root endodermis is a tractable model to address how transcription factors contribute to differentiation. We used a bottom-up approach to understand the extent to which transcription factors that are required for endodermis differentiation can confer endodermis identity to a non-native cell type. Our results show that the transcription factors SHORTROOT and MYB36 alone have limited ability to induce ectopic endodermal features in the absence of additional cues. The stele-derived signalling peptide CIF2 stabilizes SHORTROOT-induced endodermis identity acquisition. The outcome is a partially impermeable barrier deposited in the subepidermal cell layer, which has a transcriptional signature similar to the endodermis. These results demonstrate that other root cell types can be forced to differentiate into the endodermis and highlight a previously unappreciated role for receptor kinase signalling in maintaining endodermis identity.

Indexed as

ArabidopsisArabidopsis ProteinsCell DifferentiationCell WallGene Regulatory NetworksPlant CellsTranscription FactorsArabidopsis ProteinsMYB36 protein, ArabidopsisTranscription Factors

Identifiers

PMID30061749
PMCPMC6135099

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.