Evidence map›Paper›PMID 30061727›Full record

ArticleScientific reports2018

Altered secretion patterns and cell wall organization caused by loss of PodB function in the filamentous fungus Aspergillus nidulans.

Karthik R Boppidi, Liliane Fraga Costa Ribeiro, Sirasa Iambamrung, Sidney M Nelson, Yan Wang, Michelle Momany, Elizabeth A Richardson, Stephen Lincoln, Ranjan Srivastava, Steven D Harris and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Karthik R BoppidiUniversity of Maryland - Baltimore County, Department of Chemical Biochemical and Environmental Engineering, Baltimore, MD, USA.
Liliane Fraga Costa RibeiroUniversity of Maryland - Baltimore County, Department of Chemical Biochemical and Environmental Engineering, Baltimore, MD, USA.
Sirasa IambamrungUniversity of Maryland - Baltimore County, Department of Chemical Biochemical and Environmental Engineering, Baltimore, MD, USA.
Sidney M NelsonUniversity of Maryland - Baltimore County, Department of Chemical Biochemical and Environmental Engineering, Baltimore, MD, USA.
Yan WangUniversity of Maryland - College Park, Department of Cell Biology and Molecular Genetics, College Park, MD, USA.
Michelle MomanyUniversity of Georgia, Fungal Biology Group and Department of Plant Biology, Athens, GA, USA.
Elizabeth A RichardsonUniversity of Georgia, Georgia Electron Microscopy, Athens, GA, USA.
Stephen LincolnUniversity of Connecticut, Department of Chemical and Biomolecular Engineering, Storrs, CT, USA.
Ranjan SrivastavaUniversity of Connecticut, Department of Chemical and Biomolecular Engineering, Storrs, CT, USA.ORCID 0000-0003-4309-605X
Steven D HarrisUniversity of Manitoba, Department of Biological Sciences, Winnipeg, MB, Canada.
Mark R MartenUniversity of Maryland - Baltimore County, Department of Chemical Biochemical and Environmental Engineering, Baltimore, MD, USA. marten@umbc.edu.
University of Maryland, Baltimore County · USUniversity of Connecticut · USUniversity of Georgia · USUniversity of Manitoba · CAUniversity of Maryland, College Park · US

Funding

Orbitrap Fusion Tribrid Mass SpectrometerS10OD019938 · OD · UNIV OF MARYLAND, COLLEGE PARK · PI FENSELAU, CATHERINE C · 2015 to 2015
$600k
National Science Foundation (NSF) 1516905National Science Foundation (NSF) 1517309National Science Foundation (NSF) 1601935NIH HHS S10 OD019938
6 · The paper itself

Abstract

Filamentous fungi are widely used in the production of a variety of industrially relevant enzymes and proteins as they have the unique ability to secrete tremendous amounts of proteins. However, the secretory pathways in filamentous fungi are not completely understood. Here, we investigated the role of a mutation in the POlarity Defective (podB) gene on growth, protein secretion, and cell wall organization in Aspergillus nidulans using a temperature sensitive (Ts) mutant. At restrictive temperature, the mutation resulted in lack of biomass accumulation, but led to a significant increase in specific protein productivity. Proteomic analysis of the secretome showed that the relative abundance of 584 (out of 747 identified) proteins was altered due to the mutation. Of these, 517 were secreted at higher levels. Other phenotypic differences observed in the mutant include up-regulation of unfolded protein response (UPR), deformation of Golgi apparatus and uneven cell wall thickness. Furthermore, proteomic analysis of cell wall components in the mutant revealed the presence of intracellular proteins in higher abundance accompanied by lower levels of most cell wall proteins. Taken together, results from this study suggest the importance of PodB as a target when engineering fungal strains for enhanced secretion of valuable biomolecules.

Indexed as

Aspergillus nidulansCell WallFungal ProteinsGene Expression Regulation, FungalGenotypeHyphaeMutationPhenotypeProteomicsTemperatureUnfolded Protein ResponseUp-RegulationFungal Proteins

Identifiers

PMID30061727
PMCPMC6065416
OpenAlexW2883105258

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.