Evidence map›Paper›PMID 30061686›Full record

ArticleScientific reports2018

Genetic regulation of disease risk and endometrial gene expression highlights potential target genes for endometriosis and polycystic ovarian syndrome.

Jenny N Fung, Sally Mortlock, Jane E Girling, Sarah J Holdsworth-Carson, Wan Tinn Teh, Zhihong Zhu, Samuel W Lukowski, Brett D McKinnon, Allan McRae, Jian Yang and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 3 pooled it
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 3 syntheses or guidelines pooled it, 61 citations in OpenAlex.

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  16. New concepts on the etiology of endometriosis.The journal of obstetrics and gynaecology research · 2023
    Article
  17. Endometriosis and inflammatory immune responses: Indian experience.American journal of reproductive immunology (New York, N.Y. : 1989) · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 3 countries.

Jenny N FungThe Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia. j.fung1@uq.edu.au.
Sally MortlockThe Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia.
Jane E GirlingGynaecology Research Centre, The University of Melbourne, Department of Obstetrics and Gynaecology, Royal Women's Hospital, Parkville, VIC, 3052, Australia.
Sarah J Holdsworth-CarsonGynaecology Research Centre, The University of Melbourne, Department of Obstetrics and Gynaecology, Royal Women's Hospital, Parkville, VIC, 3052, Australia.
Wan Tinn TehGynaecology Research Centre, The University of Melbourne, Department of Obstetrics and Gynaecology, Royal Women's Hospital, Parkville, VIC, 3052, Australia.
Zhihong ZhuThe Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia.
Samuel W LukowskiThe Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia.ORCID 0000-0002-8598-7902
Brett D McKinnonThe Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia.
Allan McRaeThe Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia.
Jian YangThe Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia.ORCID 0000-0003-2001-2474
Martin HealeyGynaecology Research Centre, The University of Melbourne, Department of Obstetrics and Gynaecology, Royal Women's Hospital, Parkville, VIC, 3052, Australia.
Joseph E PowellThe Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia.
Peter A W RogersGynaecology Research Centre, The University of Melbourne, Department of Obstetrics and Gynaecology, Royal Women's Hospital, Parkville, VIC, 3052, Australia.
Grant W MontgomeryThe Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, 4072, Australia.ORCID 0000-0002-4140-8139
The University of Queensland · AURoyal Women's Hospital · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene expression varies markedly across the menstrual cycle and expression levels for many genes are under genetic control. We analyzed gene expression and mapped expression quantitative trait loci (eQTLs) in endometrial tissue samples from 229 women and then analyzed the overlap of endometrial eQTL signals with genomic regions associated with endometriosis and other reproductive traits. We observed a total of 45,923 cis-eQTLs for 417 unique genes and 2,968 trans-eQTLs affecting 82 unique genes. Two eQTLs were located in known risk regions for endometriosis including LINC00339 on chromosome 1 and VEZT on chromosome 12 and there was evidence for eQTLs that may be target genes in genomic regions associated with other reproductive diseases. Dynamic changes in expression of individual genes across cycle include alterations in both mean expression and transcriptional silencing. Significant effects of cycle stage on mean expression levels were observed for (2,427/15,262) probes with detectable expression in at least 90% of samples and for (2,877/9,626) probes expressed in some, but not all samples. Pathway analysis supports similar biological control of both altered expression levels and transcriptional silencing. Taken together, these data identify strong genetic effects on genes with diverse functions in human endometrium and provide a platform for better understanding genetic effects on endometrial-related pathologies.

Indexed as

Gene Expression RegulationGenetic Predisposition to DiseaseAdultAllelesCase-Control StudiesChromosomes, Human, Pair 5EndometriosisEndometriumFemaleGene FrequencyGenome-Wide Association StudyHumansMenstrual CycleMeta-Analysis as TopicMolecular Sequence AnnotationPolycystic Ovary Syndrome

Identifiers

PMID30061686
PMCPMC6065421
OpenAlexW2884664850

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.