Evidence map›Paper›PMID 30061675›Full record

ArticleNature communications2018

Organoid cultures recapitulate esophageal adenocarcinoma heterogeneity providing a model for clonality studies and precision therapeutics.

Xiaodun Li, Hayley E Francies, Maria Secrier, Juliane Perner, Ahmad Miremadi, Núria Galeano-Dalmau, William J Barendt, Laura Letchford, Genevieve M Leyden, Emma K Goffin and 13 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 207 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
207citing papers in PubMed, 2 pooled it
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

207 citing papers in PubMed, 2 syntheses or guidelines pooled it, 330 citations in OpenAlex.

  1. Pooled it
  2. Advances in Engineering Human Tissue Models.Frontiers in bioengineering and biotechnology · 2020
    Pooled it
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Review
  11. Review
  12. Organoids for Genotoxicity Assessment.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. Multiscale Construction, Evaluation, and Application of Organoids.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  18. Review
  19. Review
  20. Review

147 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 6 institutions in 1 country.

Xiaodun LiMRC Cancer Unit, University of Cambridge, Cambridge, CB2 0XZ, UK.
Hayley E FranciesWellcome Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.
Maria SecrierCancer Research UK Cambridge Institute, Cambridge, CB2 0RE, UK.
Juliane PernerCancer Research UK Cambridge Institute, Cambridge, CB2 0RE, UK.
Ahmad MiremadiCambridge University Hospitals NHS Trust, Cambridge, CB2 0QQ, UK.
Núria Galeano-DalmauMRC Cancer Unit, University of Cambridge, Cambridge, CB2 0XZ, UK.
William J BarendtWellcome Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.
Laura LetchfordWellcome Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.
Genevieve M LeydenWellcome Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.
Emma K GoffinWellcome Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.
Andrew BarthorpeWellcome Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.
Howard LightfootWellcome Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.
Elisabeth ChenWellcome Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.
James GilbertWellcome Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.
Ayesha NooraniMRC Cancer Unit, University of Cambridge, Cambridge, CB2 0XZ, UK.
Ginny DevonshireCancer Research UK Cambridge Institute, Cambridge, CB2 0RE, UK.ORCID http://orcid.org/0000-0002-1408-8176
Lawrence BowerCancer Research UK Cambridge Institute, Cambridge, CB2 0RE, UK.
Amber GranthamMRC Cancer Unit, University of Cambridge, Cambridge, CB2 0XZ, UK.
Shona MacRaeMRC Cancer Unit, University of Cambridge, Cambridge, CB2 0XZ, UK.
Nicola GrehanCambridge University Hospitals NHS Trust, Cambridge, CB2 0QQ, UK.
David C WedgeBig Data Institute, University of Oxford, Oxford, OX3 7LF, UK.ORCID http://orcid.org/0000-0002-7572-3196
Rebecca C FitzgeraldMRC Cancer Unit, University of Cambridge, Cambridge, CB2 0XZ, UK. RCF29@mrc-cu.cam.ac.uk.
Mathew J GarnettWellcome Sanger Institute, Hinxton, Cambridge, CB10 1SA, UK.
Wellcome Sanger Institute · GBUniversity of Cambridge · GBCancer Research UK Cambridge Center · GBCambridge University Hospitals NHS Foundation Trust · GBAstraZeneca (United Kingdom) · GBOpen Data Institute · GB

Funding

PERINUCLEOLAR COMPARTMENT AS A PUTATIVE CANCER MARKERR21CA084369 · NCI · NORTHWESTERN UNIVERSITY · PI HUANG, SUI · 2000 to 2001
$273k
Cancer Research UK 22131Cancer Research UK 22720Medical Research Council MC_UU_12022/2Wellcome Trust 102696
6 · The paper itself

Abstract

Esophageal adenocarcinoma (EAC) incidence is increasing while 5-year survival rates remain less than 15%. A lack of experimental models has hampered progress. We have generated clinically annotated EAC organoid cultures that recapitulate the morphology, genomic, and transcriptomic landscape of the primary tumor including point mutations, copy number alterations, and mutational signatures. Karyotyping of organoid cultures has confirmed polyclonality reflecting the clonal architecture of the primary tumor. Furthermore, subclones underwent clonal selection associated with driver gene status. Medium throughput drug sensitivity testing demonstrates the potential of targeting receptor tyrosine kinases and downstream mediators. EAC organoid cultures provide a pre-clinical tool for studies of clonal evolution and precision therapeutics.

Indexed as

Clonal EvolutionAdenocarcinomaAgedAged, 80 and overDNA Copy Number VariationsDNA Mutational AnalysisDrug Screening Assays, AntitumorEsophageal NeoplasmsFemaleHumansInhibitory Concentration 50KaryotypingMaleMiddle AgedMutationOrganoidsReceptor Protein-Tyrosine Kinases

Identifiers

PMID30061675
PMCPMC6065407
OpenAlexW2884074563

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.