Evidence map›Paper›PMID 30061388›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Quantitative measurements of protein-surface interaction thermodynamics.

Martin Kurnik, Gabriel Ortega, Philippe Dauphin-Ducharme, Hui Li, Amanda Caceres, Kevin W Plaxco

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Surface Attachment Enhances the Thermodynamic Stability of Protein L.Angewandte Chemie (International ed. in English) · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Martin KurnikDepartment of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106.ORCID 0000-0001-9255-9730
Gabriel OrtegaDepartment of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106.ORCID 0000-0002-7126-9096
Philippe Dauphin-DucharmeDepartment of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106.ORCID 0000-0002-0490-7115
Hui LiDepartment of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106.ORCID 0000-0001-7849-9735
Amanda CaceresDepartment of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106.ORCID 0000-0001-8706-7547
Kevin W PlaxcoDepartment of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106; kwp@chem.ucsb.edu.ORCID 0000-0003-4772-8771

Funding

The thermodynamics of protein-surface interactionsR01GM118560 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI PLAXCO, KEVIN W · 2017 to 2020
$1.4M
A new tool for measuring surface-biomolecule interactionsR21EB018617 · NIBIB · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI PLAXCO, KEVIN W · 2014 to 2015
$409k
NIBIB NIH HHS R21 EB018617NIGMS NIH HHS R01 GM118560
6 · The paper itself

Abstract

Whereas proteins generally remain stable upon interaction with biological surfaces, they frequently unfold on and adhere to artificial surfaces. Understanding the physicochemical origins of this discrepancy would facilitate development of protein-based sensors and other technologies that require surfaces that do not compromise protein structure and function. To date, however, only a small number of such artificial surfaces have been reported, and the physics of why these surfaces support functional biomolecules while others do not has not been established. Thus motivated, we have developed an electrochemical approach to determining the folding free energy of proteins site-specifically attached to chemically well-defined, macroscopic surfaces. Comparison with the folding free energies seen in bulk solution then provides a quantitative measure of the extent to which surface interactions alter protein stability. As proof-of-principle, we have characterized the FynSH3 domain site-specifically attached to a hydroxyl-coated surface. Upon guanidinium chloride denaturation, the protein unfolds in a reversible, two-state manner with a free energy within 2 kJ/mol of the value seen in bulk solution. Assuming that excluded volume effects stabilize surface-attached proteins, this observation suggests there are countervening destabilizing interactions with the surface that, under these conditions, are similar in magnitude. Our technique constitutes an unprecedented experimental tool with which to answer long-standing questions regarding the molecular-scale origins of protein-surface interactions and to facilitate rational optimization of surface biocompatibility.

Indexed as

Protein Foldingsrc Homology DomainsThermodynamicsElectrochemical TechniquesHumansProtein StabilityProto-Oncogene Proteins c-fynFYN protein, humanProto-Oncogene Proteins c-fynbiophysicsbiosensorsprotein foldingprotein−surface interactionssquare wave voltammetry

Identifiers

PMID30061388
PMCPMC6099891

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.