Evidence map›Paper›PMID 30061186›Full record

ArticleMolecular cancer research : MCR2018

Genomic cfDNA Analysis of Aqueous Humor in Retinoblastoma Predicts Eye Salvage: The Surrogate Tumor Biopsy for Retinoblastoma.

Jesse L Berry, Liya Xu, Irsan Kooi, A Linn Murphree, Rishvanth K Prabakar, Mark Reid, Kevin Stachelek, Bao Han A Le, Lisa Welter, Bibiana J Reiser and 7 more

Registry-linked trialAbstract read
In one paragraph

Article in Molecular cancer research : MCR, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04959097 (Retinoblastoma Patient Clinical Database and Tissue Repository), which is not on this map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04959097 recruitingnot on this map

Retinoblastoma Patient Clinical Database and Tissue Repository

Typeobservational_patient_registrySponsorChildren's Hospital Los AngelesRan2017 to 2030Enrolled800ConditionsRetinoblastoma, Retinoblastoma Bilateral, Retinoblastoma Unilateral
3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 123 citations in OpenAlex.

  1. Article
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  5. Review
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  7. Review
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  9. Article
  10. Article
  11. [Liquid biopsy in retinoblastomas].Die Ophthalmologie · 2024
    Review
  12. Article
  13. Article
  14. Article
  15. Targeting GPC2 on Intraocular and CNS Metastatic Retinoblastomas with Local and Systemic Delivery of CAR T Cells.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Article
  16. Article
  17. Article
  18. Observational
  19. Article
  20. Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Jesse L BerryThe Vision Center at Children's Hospital Los Angeles, Los Angeles, California. jesse.berry@med.usc.edu.ORCID 0000-0002-8907-9100
Liya XuDepartment of Biological Sciences, Dornsife College of Letters, Arts, and Sciences, University of Southern California, Los Angeles, California.ORCID 0000-0002-5501-2039
Irsan KooiLeiden, the Netherlands.
A Linn MurphreeThe Vision Center at Children's Hospital Los Angeles, Los Angeles, California.
Rishvanth K PrabakarDepartment of Molecular and Computational Biology, University of Southern California, Los Angeles, California.
Mark ReidThe Vision Center at Children's Hospital Los Angeles, Los Angeles, California.
Kevin StachelekThe Vision Center at Children's Hospital Los Angeles, Los Angeles, California.ORCID 0000-0003-2085-695X
Bao Han A LeThe Vision Center at Children's Hospital Los Angeles, Los Angeles, California.
Lisa WelterDepartment of Biological Sciences, Dornsife College of Letters, Arts, and Sciences, University of Southern California, Los Angeles, California.ORCID 0000-0003-4597-4901
Bibiana J ReiserThe Vision Center at Children's Hospital Los Angeles, Los Angeles, California.
Patricia Chévez-BarriosDepartments of Pathology and Genomic Medicine and Ophthalmology, Houston Methodist, Weill Cornell Medical College, Houston, Texas.
Rima JubranThe Children's Center for Cancer and Blood Diseases, Children's Hospital Los Angeles, Los Angeles, California.
Thomas C LeeThe Vision Center at Children's Hospital Los Angeles, Los Angeles, California.
Jonathan W KimThe Vision Center at Children's Hospital Los Angeles, Los Angeles, California.
Peter KuhnDepartment of Biological Sciences, Dornsife College of Letters, Arts, and Sciences, University of Southern California, Los Angeles, California.
David CobrinikThe Vision Center at Children's Hospital Los Angeles, Los Angeles, California.
James HicksDepartment of Biological Sciences, Dornsife College of Letters, Arts, and Sciences, University of Southern California, Los Angeles, California.
Children's Hospital of Los Angeles · USUniversity of Southern California · USCornell University · USTata Steel (Netherlands) · NL

Funding

Proteomics CoreP30EY010572 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI John Peter Campbell · 1995 to 2026
$19.4M
Development of a surrogate liquid biopsy from the aqueous humor in retinoblastoma eyes.K08CA232344 · NCI · CHILDREN'S HOSPITAL OF LOS ANGELES · PI BERRY, JESSE L · 2018 to 2022
$1.1M
NCI NIH HHS K08 CA232344NEI NIH HHS P30 EY010572
6 · The paper itself

Abstract

Tumor-derived cell-free DNA (cfDNA) has biomarker potential; therefore, this study aimed to identify cfDNA in the aqueous humor (AH) of retinoblastoma eyes and correlate somatic chromosomal copy-number alterations (SCNA) with clinical outcomes, specifically eye salvage. AH was extracted via paracentesis during intravitreal injection of chemotherapy or enucleation. Shallow whole-genome sequencing was performed using isolated cfDNA to assess for highly recurrent SCNAs in retinoblastoma including gain of 1q, 2p, 6p, loss of 13q, 16q, and focal

Indexed as

AdolescentAdultAqueous HumorBiopsyCell-Free Nucleic AcidsChildChild, PreschoolDNA, NeoplasmEye EnucleationFemaleGenomicsHumansInfantInfant, NewbornMaleMiddle AgedCell-Free Nucleic AcidsDNA, Neoplasm

Identifiers

PMID30061186
PMCPMC6214755
OpenAlexW2885182378

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.