Evidence map›Paper›PMID 30061100›Full record

ArticleEMBO reports2018

KAP1 regulates endogenous retroviruses in adult human cells and contributes to innate immune control.

Christopher Hc Tie, Liane Fernandes, Lucia Conde, Luisa Robbez-Masson, Rebecca P Sumner, Tom Peacock, Maria Teresa Rodriguez-Plata, Greta Mickute, Robert Gifford, Greg J Towers and 2 more

Open access · hybridAbstract read
In one paragraph

Article in EMBO reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 125 citations in OpenAlex.

  1. Gut microbes · 2026
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  2. Review
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  12. KAP1 in antiviral immunity: dual roles in viral silencing and immune regulation.Frontiers in cellular and infection microbiology · 2025
    Review
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14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Christopher Hc TieDivision of Infection and Immunity, University College London, London, UK.
Liane FernandesDivision of Infection and Immunity, University College London, London, UK.
Lucia CondeBill Lyons Informatics Centre, UCL Cancer Institute, London, UK.
Luisa Robbez-MassonDivision of Infection and Immunity, University College London, London, UK.
Rebecca P SumnerDivision of Infection and Immunity, University College London, London, UK.
Tom PeacockDivision of Infection and Immunity, University College London, London, UK.
Maria Teresa Rodriguez-PlataDivision of Infection and Immunity, University College London, London, UK.
Greta MickuteDivision of Infection and Immunity, University College London, London, UK.
Robert GiffordMRC-University of Glasgow Centre for Virus Research, Glasgow, UK.
Greg J TowersDivision of Infection and Immunity, University College London, London, UK.
Javier HerreroBill Lyons Informatics Centre, UCL Cancer Institute, London, UK.ORCID 0000-0001-7313-717X
Helen M RoweDivision of Infection and Immunity, University College London, London, UK h.rowe@ucl.ac.uk.ORCID 0000-0001-5881-0290
University College London · GBMRC University of Glasgow Centre for Virus Research · GB

Funding

Cancer Research UK C416/A25145European Research Council 339223Medical Research Council G0801172Medical Research Council G9721629Medical Research Council MC_UU_12014/10Wellcome TrustWellcome Trust 101200/Z/13/ZWellcome Trust 108183
6 · The paper itself

Abstract

Endogenous retroviruses (ERVs) have accumulated in vertebrate genomes and contribute to the complexity of gene regulation. KAP1 represses ERVs during development by its recruitment to their repetitive sequences through KRAB zinc-finger proteins (KZNFs), but little is known about the regulation of ERVs in adult tissues. We observed that KAP1 repression of HERVK14C was conserved in differentiated human cells and performed KAP1 knockout to obtain an overview of KAP1 function. Our results show that KAP1 represses ERVs (including HERV-T and HERV-S) and ZNF genes, both of which overlap with KAP1 binding sites and H3K9me3 in multiple cell types. Furthermore, this pathway is functionally conserved in adult human peripheral blood mononuclear cells. Cytosine methylation that acts on KAP1 regulated loci is necessary to prevent an interferon response, and KAP1-depletion leads to activation of some interferon-stimulated genes. Finally, loss of KAP1 leads to a decrease in H3K9me3 enrichment at ERVs and ZNF genes and an RNA-sensing response mediated through MAVS signaling. These data indicate that the KAP1-KZNF pathway contributes to genome stability and innate immune control in adult human cells.

Indexed as

Binding SitesDNA MethylationEndogenous RetrovirusesGene Expression RegulationGene Knockout TechniquesGenome, HumanHistonesHumansImmunity, InnateLeukocytes, MononuclearPromoter Regions, GeneticRepressor ProteinsTripartite Motif-Containing Protein 28HistonesRepressor ProteinsTRIM28 protein, humanTripartite Motif-Containing Protein 28ZNF350 protein, human5‐azacytidineadult human cellsendogenous retrovirusesepigenetic controlinnate immune genesKAP1 (KRAB‐associated protein 1)retrotransposonsSETDB1

Identifiers

PMID30061100
PMCPMC6172469
OpenAlexW2883776632

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.