Evidence map›Paper›PMID 30060766›Full record

ArticleSkeletal muscle2018

Detection of variants in dystroglycanopathy-associated genes through the application of targeted whole-exome sequencing analysis to a large cohort of patients with unexplained limb-girdle muscle weakness.

Katherine Johnson, Marta Bertoli, Lauren Phillips, Ana Töpf, Peter Van den Bergh, John Vissing, Nanna Witting, Shahriar Nafissi, Shirin Jamal-Omidi, Anna Łusakowska and 22 more

Open access · goldAbstract readMulticenter Study
In one paragraph

Article in Skeletal muscle, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 53 citations in OpenAlex.

  1. Review
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  9. Undetected Neuromuscular Disease in Patients after Heart Transplantation.International journal of molecular sciences · 2024
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  12. Nucleus Mechanosensing in Cardiomyocytes.International journal of molecular sciences · 2023
    Review
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  19. POMT1 and POMT2 gene mutations result in 2 cases ofZhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2021
    Article
  20. Homozygous deletion, c. 1114-1116del, in exon 8 of theWorld journal of clinical cases · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 20 institutions in 10 countries.

Katherine JohnsonJohn Walton Muscular Dystrophy Research Centre, Institute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, UK.
Marta BertoliJohn Walton Muscular Dystrophy Research Centre, Institute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, UK.
Lauren PhillipsJohn Walton Muscular Dystrophy Research Centre, Institute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, UK.
Ana TöpfJohn Walton Muscular Dystrophy Research Centre, Institute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, UK.
Peter Van den BerghNeuromuscular Reference Centre, University Hospital St-Luc, University of Louvain, Brussels, Belgium.
John VissingCopenhagen Neuromuscular Center, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark.
Nanna WittingCopenhagen Neuromuscular Center, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark.
Shahriar NafissiIranian Center for Neurological Research, Shariati Hospital, Tehran University of Medical Sciences, Tehran, Iran.
Shirin Jamal-OmidiIranian Center for Neurological Research, Shariati Hospital, Tehran University of Medical Sciences, Tehran, Iran.
Anna ŁusakowskaDepartment of Neurology, Medical University of Warsaw, Warsaw, Poland.
Anna Kostera-PruszczykDepartment of Neurology, Medical University of Warsaw, Warsaw, Poland.
Anna Potulska-ChromikDepartment of Neurology, Medical University of Warsaw, Warsaw, Poland.
Nicolas DeconinckGhent University Hospital, De Pintelaan 185, Ghent, Belgium.
Carina Wallgren-PetterssonThe Folkhaelsan Department of Medical Genetics, The Folkhaelsan Institute of Genetics, and the Department of Medical and Clinical Genetics, University of Helsinki, Topeliuksenkatu 20, Helsinki, Finland.
Sonja Strang-KarlssonThe Folkhaelsan Department of Medical Genetics, The Folkhaelsan Institute of Genetics, and the Department of Medical and Clinical Genetics, University of Helsinki, Topeliuksenkatu 20, Helsinki, Finland.
Jaume ColomerUnitat de Patología Neuromuscular, Servei de Neurologia, Hospital Sant Joan de Déu, Barcelona, Spain.
Kristl G ClaeysDepartment of Neurology, University Hospitals Leuven, Leuven, Belgium.
Willem De RidderNeurogenetics Group, VIB-UA, Center for Molecular Neurology, University of Antwerp, Antwerp, Belgium.
Jonathan BaetsNeurogenetics Group, VIB-UA, Center for Molecular Neurology, University of Antwerp, Antwerp, Belgium.
Maja von der HagenAbteilung Neuropädiatrie, Medizinische Fakultät Carl Gustav Carus, Technische Universität Dresden, Dresden, Germany.
Roberto Fernández-TorrónJohn Walton Muscular Dystrophy Research Centre, Institute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, UK.
Miren Zulaica IjurcoNeuroscience Area, Biodonostia Health Research Institute, San Sebastián, Spain.
Juan Bautista Espinal ValenciaNeuroscience Area, Biodonostia Health Research Institute, San Sebastián, Spain.
Andreas HahnDepartment of Child Neurology, Justus-Liebig University, Gießen, Germany.
Hacer DurmusDepartment of Neurology, Istanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey.
Tracey WillisThe Robert Jones and Agnes Hunt Orthopaedic Hospital, NHS Foundation Trust, Oswestry, UK.
Liwen XuAnalytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA.
Elise ValkanasAnalytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA.
Thomas E MullenAnalytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA.
Monkol LekAnalytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA.
Daniel G MacArthurAnalytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA.
Volker StraubJohn Walton Muscular Dystrophy Research Centre, Institute of Genetic Medicine, Newcastle University, Newcastle upon Tyne, UK. volker.straub@newcastle.ac.uk.
Newcastle University · GBMassachusetts General Hospital · USMedical University of Warsaw · PLBiomedical Research Networking Center on Neurodegenerative Diseases · ESBroad Institute · USFolkhälsans Forskningscentrum · FITehran University of Medical Sciences · IRAntwerp University Hospital · BECliniques Universitaires Saint-Luc · BEHospital Sant Joan de Déu Barcelona · ESIstanbul University · TRNewcastle upon Tyne Hospitals NHS Foundation Trust · GBQueen Fabiola Children's University Hospital · BERigshospitalet · DKRobert Jones and Agnes Hunt Orthopaedic Hospital · GBTU Dresden · DEUniversitätsklinikum Aachen · DEUniversity of Antwerp · BEUniversity of Copenhagen · DKUniversity of Giessen · DE

Funding

Joint Center for Mendelian GenomicsUM1HG008900 · NHGRI · BROAD INSTITUTE, INC. · PI O'DONNELL-LURIA, ANNE, REHM, HEIDI L · 2016 to 2020
$16.5M
A powerful web-based discovery platform for rare disease geneticsR01HG009141 · NHGRI · BROAD INSTITUTE, INC. · PI QUINLAN, AARON R, REHM, HEIDI L · 2017 to 2020
$2.9M
NHGRI NIH HHS R01 HG009141NHGRI NIH HHS UM1 HG008900
6 · The paper itself

Abstract

backgroundDystroglycanopathies are a clinically and genetically heterogeneous group of disorders that are typically characterised by limb-girdle muscle weakness. Mutations in 18 different genes have been associated with dystroglycanopathies, the encoded proteins of which typically modulate the binding of α-dystroglycan to extracellular matrix ligands by altering its glycosylation. This results in a disruption of the structural integrity of the myocyte, ultimately leading to muscle degeneration.

methodsDeep phenotypic information was gathered using the PhenoTips online software for 1001 patients with unexplained limb-girdle muscle weakness from 43 different centres across 21 European and Middle Eastern countries. Whole-exome sequencing with at least 250 ng DNA was completed using an Illumina exome capture and a 38 Mb baited target. Genes known to be associated with dystroglycanopathies were analysed for disease-causing variants.

resultsSuspected pathogenic variants were detected in DPM3, ISPD, POMT1 and FKTN in one patient each, in POMK in two patients, in GMPPB in three patients, in FKRP in eight patients and in POMT2 in ten patients. This indicated a frequency of 2.7% for the disease group within the cohort of 1001 patients with unexplained limb-girdle muscle weakness. The phenotypes of the 27 patients were highly variable, yet with a fundamental presentation of proximal muscle weakness and elevated serum creatine kinase.

conclusionsOverall, we have identified 27 patients with suspected pathogenic variants in dystroglycanopathy-associated genes. We present evidence for the genetic and phenotypic diversity of the dystroglycanopathies as a disease group, while also highlighting the advantage of incorporating next-generation sequencing into the diagnostic pathway of rare diseases.

Indexed as

Genetic VariationAdolescentAdultAgedAged, 80 and overChildChild, PreschoolDystroglycansExome SequencingFemaleGenetic Predisposition to DiseaseGlycosylationHeterozygoteHomozygoteHumansMaleDAG1 protein, humanDystroglycansMuscle ProteinsDystroglycanopathiesLimb-girdle muscle weaknessWhole-exome sequencing

Identifiers

PMID30060766
PMCPMC6066920
OpenAlexW2885137774

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.