Evidence map›Paper›PMID 30060195›Full record

ArticleGenome biology and evolution2018

Genes Involved in Drosophila melanogaster Ovarian Function Are Highly Conserved Throughout Evolution.

Sebastien Elis, Alice Desmarchais, Emilie Cardona, Sophie Fouchecourt, Rozenn Dalbies-Tran, Thaovi Nguyen, Violette Thermes, Virginie Maillard, Pascal Papillier, Svetlana Uzbekova and 3 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in Genome biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.5field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

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  4. A high-throughput method for quantifyingbioRxiv : the preprint server for biology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Sebastien ElisUMR PRC, CNRS, IFCE, INRA, Université de Tours, Nouzilly, France.
Alice DesmarchaisUMR PRC, CNRS, IFCE, INRA, Université de Tours, Nouzilly, France.
Emilie CardonaLPGP, INRA, Rennes, France.
Sophie FouchecourtUMR PRC, CNRS, IFCE, INRA, Université de Tours, Nouzilly, France.
Rozenn Dalbies-TranUMR PRC, CNRS, IFCE, INRA, Université de Tours, Nouzilly, France.
Thaovi NguyenLPGP, INRA, Rennes, France.
Violette ThermesLPGP, INRA, Rennes, France.
Virginie MaillardUMR PRC, CNRS, IFCE, INRA, Université de Tours, Nouzilly, France.
Pascal PapillierUMR PRC, CNRS, IFCE, INRA, Université de Tours, Nouzilly, France.
Svetlana UzbekovaUMR PRC, CNRS, IFCE, INRA, Université de Tours, Nouzilly, France.
Julien BobeLPGP, INRA, Rennes, France.
Jean-Louis CoudercGReD Laboratory, Université Clermont Auvergne - CNRS UMR 6293- INSERM U1103, Clermont-Ferrand, France.
Philippe MongetUMR PRC, CNRS, IFCE, INRA, Université de Tours, Nouzilly, France.
Fish Physiology and Genomics Institute · FRUniversité de Tours · FRCentre National de la Recherche Scientifique · FRPhysiologie de la Reproduction et des Comportements · FRUniversity of Clermont Auvergne · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This work presents a systematic approach to study the conservation of genes between fruit flies and mammals. We have listed 971 Drosophila genes involved in female reproduction at the ovarian level and systematically looked for orthologs in the Ciona, zebrafish, coelacanth, lizard, chicken, and mouse. Depending on the species, the percentage of these Drosophila genes with at least one ortholog varies between 69% and 78%. In comparison, only 42% of all the Drosophila genes have an ortholog in the mouse genome (P < 0.0001), suggesting a dramatically higher evolutionary conservation of ovarian genes. The 177 Drosophila genes that have no ortholog in mice and other vertebrates correspond to genes that are involved in mechanisms of oogenesis that are specific to the fruit fly or the insects. Among 759 genes with at least one ortholog in the zebrafish, 73 have an expression enriched in the ovary in this species (RNA-seq data). Among 760 genes that have at least one ortholog in the mouse; 76 and 11 orthologs are reported to be preferentially and exclusively expressed in the mouse ovary, respectively (based on the UniGene expressed sequence tag database). Several of them are already known to play a key role in murine oogenesis and/or to be enriched in the mouse/zebrafish oocyte, whereas others have remained unreported. We have investigated, by RNA-seq and real-time quantitative PCR, the exclusive ovarian expression of 10 genes in fish and mammals. Overall, we have found several novel candidates potentially involved in mammalian oogenesis by an evolutionary approach and using the fruit fly as an animal model.

Indexed as

Sequence Homology, Nucleic AcidAnimalsBase SequenceBiological EvolutionChordataConserved SequenceDrosophila melanogasterFemaleMiceOogenesis

Identifiers

PMID30060195
PMCPMC6173279
OpenAlexW2883917672

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.