Evidence map›Paper›PMID 30060169›Full record

ArticleGenome biology and evolution2018

Closed Genome and Comparative Phylogenetic Analysis of the Clinical Multidrug Resistant Shigella sonnei Strain 866.

Anna Allué-Guardia, Sara S K Koenig, Pablo Quirós, Maite Muniesa, James L Bono, Mark Eppinger

Abstract read
In one paragraph

Article in Genome biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Efficacy ofMicrobiology spectrum · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Observational
  8. Infection and drug resistance · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Anna Allué-GuardiaDepartment of Biology, University of Texas at San Antonio.
Sara S K KoenigDepartment of Biology, University of Texas at San Antonio.
Pablo QuirósDepartment of Genetics, Microbiology and Statistics, University of Barcelona, Spain.
Maite MuniesaDepartment of Genetics, Microbiology and Statistics, University of Barcelona, Spain.
James L BonoAgricultural Research Service, United States Department of Agriculture, U.S. Meat Animal Research Center, Clay Center, Nebraska.
Mark EppingerDepartment of Biology, University of Texas at San Antonio.

Funding

Phylogenomic framework for virulence studies of Escherichia coli O157:H7SC2AI120941 · NIAID · UNIVERSITY OF TEXAS SAN ANTONIO · PI EPPINGER, MARK · 2015 to 2017
$441k
NIAID NIH HHS SC2 AI120941
6 · The paper itself

Abstract

Shigella sonnei is responsible for the majority of shigellosis infections in the US with over 500,000 cases reported annually. Here, we present the complete genome of the clinical multidrug resistant (MDR) strain 866, which is highly susceptible to bacteriophage infections. The strain has a circular chromosome of 4.85 Mb and carries a 113 kb MDR plasmid. This IncB/O/K/Z-type plasmid, termed p866, confers resistance to five different classes of antibiotics including ß-lactamase, sulfonamide, tetracycline, aminoglycoside, and trimethoprim. Comparative analysis of the plasmid architecture and gene inventory revealed that p866 shares its plasmid backbone with previously described IncB/O/K/Z-type Shigella spp. and Escherichia coli plasmids, but is differentiated by the insertion of antibiotic resistance cassettes, which we found associated with mobile genetic elements such as Tn3, Tn7, and Tn10. A whole genome-derived phylogenetic reconstruction showed the evolutionary relationships of S. sonnei strain 866 and the four established Shigella species, highlighting the clonal nature of S. sonnei.

Indexed as

Drug Resistance, Multiple, BacterialGenome, BacterialAnti-Bacterial AgentsDNA, BacterialDysentery, BacillaryHumansPhylogenyPlasmidsShigella sonneiAnti-Bacterial AgentsDNA, Bacterial

Identifiers

PMID30060169
PMCPMC6128377

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.