Evidence map›Paper›PMID 30060167›Full record

ArticleGenome biology and evolution2018

Loss of Genomic Diversity in a Neisseria meningitidis Clone Through a Colonization Bottleneck.

Araceli Lamelas, Abdul-Wahab M Hamid, Jean-Pierre Dangy, Julia Hauser, Maja Jud, Katharina Röltgen, Abraham Hodgson, Thomas Junghanss, Simon R Harris, Julian Parkhill and 2 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 5 countries.

Araceli LamelasSwiss Tropical and Public Health Institute, Basel, Switzerland.
Abdul-Wahab M HamidSwiss Tropical and Public Health Institute, Basel, Switzerland.
Jean-Pierre DangySwiss Tropical and Public Health Institute, Basel, Switzerland.
Julia HauserSwiss Tropical and Public Health Institute, Basel, Switzerland.
Maja JudSwiss Tropical and Public Health Institute, Basel, Switzerland.
Katharina RöltgenSwiss Tropical and Public Health Institute, Basel, Switzerland.
Abraham HodgsonNavrongo Health Research Centre, Ministry of Health, Navrongo, Ghana.
Thomas JunghanssSection of Clinical Tropical Medicine, University Hospital Heidelberg, Germany.
Simon R HarrisWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom.
Julian ParkhillWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom.
Stephen D BentleyWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom.
Gerd PluschkeSwiss Tropical and Public Health Institute, Basel, Switzerland.
University of Basel · CHWellcome Sanger Institute · GBNavrongo Health Research Centre · GHSwiss Tropical and Public Health Institute · CHHeidelberg University · DEInstituto de Ecología · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neisseria meningitidis is the leading cause of epidemic meningitis in the "meningitis belt" of Africa, where clonal waves of colonization and disease are observed. Point mutations and horizontal gene exchange lead to constant diversification of meningococcal populations during clonal spread. Maintaining a high genomic diversity may be an evolutionary strategy of meningococci that increases chances of fixing occasionally new highly successful "fit genotypes". We have performed a longitudinal study of meningococcal carriage and disease in northern Ghana by analyzing cerebrospinal fluid samples from all suspected meningitis cases and monitoring carriage of meningococci by twice yearly colonization surveys. In the framework of this study, we observed complete replacement of an A: sequence types (ST)-2859 clone by a W: ST-2881 clone. However, after a gap of 1 year, A: ST-2859 meningococci re-emerged both as colonizer and meningitis causing agent. Our whole genome sequencing analyses compared the A population isolated prior to the W colonization and disease wave with the re-emerging A meningococci. This analysis revealed expansion of one clone differing in only one nonsynonymous SNP from several isolates already present in the original A: ST-2859 population. The colonization bottleneck caused by the competing W meningococci thus resulted in a profound reduction in genomic diversity of the A meningococcal population.

Indexed as

Genetic VariationGhanaHumansMeningitisNeisseria meningitidisPhylogenyRecombination, Genetic

Identifiers

PMID30060167
PMCPMC6110524
OpenAlexW2883507217

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.