Evidence map›Paper›PMID 30060095›Full record

ArticleThe Journal of infectious diseases2019

Whole-Blood Transcriptional Signatures Composed of Erythropoietic and NRF2-Regulated Genes Differ Between Cerebral Malaria and Severe Malarial Anemia.

Srinivas Nallandhighal, Gregory S Park, Yen-Yi Ho, Robert O Opoka, Chandy C John, Tuan M Tran

Abstract read
In one paragraph

Article in The Journal of infectious diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 2 pooled it
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 2 syntheses or guidelines pooled it, 39 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Srinivas NallandhighalDivision of Infectious Diseases, Department of Medicine, Indiana University School of Medicine, Indianapolis.
Gregory S ParkDivision of Global Pediatrics, Department of Pediatrics, University of Minnesota Medical School, Minneapolis.
Yen-Yi HoDepartment of Statistics, College of Arts and Sciences, University of South Carolina, Columbia.
Robert O OpokaDepartment of Paediatrics and Child Health, Makerere University, Kampala, Uganda.
Chandy C JohnDivision of Infectious Diseases, Department of Medicine, Indiana University School of Medicine, Indianapolis.
Tuan M TranDivision of Infectious Diseases, Department of Medicine, Indiana University School of Medicine, Indianapolis.
Indiana University School of MedicineUniversity of Minnesota Medical Center · USMakerere University · UGUniversity of South Carolina · US

Funding

Severe Malaria And Risk to The Brain (SMART Brain)R01NS055349 · NINDS · UNIVERSITY OF MINNESOTA · PI Chandy C. John, Ruth Namazzi · 2008 to 2026
$11.2M
Defining clinical and sterile immunity to Plasmodium falciparum infection using systems biology approachesK08AI125682 · NIAID · INDIANA UNIVERSITY INDIANAPOLIS · PI TRAN, TUAN MANH · 2017 to 2021
$926k
NIAID NIH HHS K08 AI125682NINDS NIH HHS R01 NS055349
6 · The paper itself

Abstract

Background: Among the severe malaria syndromes, severe malarial anemia (SMA) is the most common, whereas cerebral malaria (CM) is the most lethal. However, the mechanisms that lead to CM and SMA are unclear. Methods: We compared transcriptomic profiles of whole blood obtained from Ugandan children with acute CM (n = 17) or SMA (n = 17) and community children without Plasmodium falciparum infection (n = 12) and determined the relationships among gene expression, hematological indices, and relevant plasma biomarkers. Results: Both CM and SMA demonstrated predominantly upregulated enrichment of dendritic cell activation, inflammatory/Toll-like receptor/chemokines, and monocyte modules, but downregulated enrichment of lymphocyte modules. Nuclear factor, erythroid 2 like 2 (Nrf2)-regulated genes were overexpressed in children with SMA relative to CM, with the highest expression in children with both SMA and sickle cell disease (HbSS), corresponding with elevated plasma heme oxygenase-1 in this group. Erythroid and reticulocyte-specific signatures were markedly decreased in CM relative to SMA despite higher hemoglobin levels and appropriate increases in erythropoietin. Viral sensing/interferon-regulatory factor 2 module expression and plasma interferon-inducible protein-10/CXCL10 negatively correlated with reticulocyte-specific signatures. Conclusions: Compared with SMA, CM is associated with downregulation of Nrf2-related and erythropoiesis signatures by whole-blood transcriptomics. Future studies are needed to confirm these findings and assess pathways that may be amenable to interventions to ameliorate CM and SMA.

Indexed as

AnemiaAnemia, Sickle CellBiomarkersChemokine CXCL10ChemokinesChildChild, PreschoolDendritic CellsDown-RegulationErythroid CellsErythropoiesisErythropoietinFemaleGene Expression ProfilingGene Expression RegulationHeme Oxygenase-1BiomarkersChemokine CXCL10ChemokinesCXCL10 protein, humanErythropoietinHeme Oxygenase-1HemoglobinsInterferon Regulatory Factor-2NFE2L2 protein, humanNF-E2-Related Factor 2Toll-Like Receptors

Identifiers

PMID30060095
PMCPMC6284545
OpenAlexW2883066527

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.