ArticleGenome biology and evolution2018
Draft Genome Sequence for the Tree Pathogen Phytophthora plurivora.
Article in Genome biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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12 citing papers in PubMed, 26 citations in OpenAlex.
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- Draft genome assemblies for tree pathogens Phytophthora pseudosyringae and Phytophthora boehmeriae.G3 (Bethesda, Md.) · 2021Article
- Genome Analysis ofPlants (Basel, Switzerland) · 2021Article
- Comparison of two commercial recirculated aquacultural systems and their microbial potential in plant disease suppression.BMC microbiology · 2021Article
- Niche adaptation promoted the evolutionary diversification of tiny ocean predators.Proceedings of the National Academy of Sciences of the United States of America · 2021Article
- Comparative Genomic Analysis Reveals Genetic Variation and Adaptive Evolution in the Pathogenicity-Related Genes ofFrontiers in microbiology · 2021Article
- Organize, Don't Agonize: Strategic Success ofMicroorganisms · 2020Review
- Comparative Genomic and Proteomic Analyses of Three WidespreadMicroorganisms · 2020Article
- Arms race: diverse effector proteins with conserved motifs.Plant signaling & behavior · 2019Article
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Authors and funding
9 authors at 4 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Species from the genus Phytophthora are well represented among organisms causing serious diseases on trees. Phytophthora plurivora has been implicated in long-term decline of woodland trees across Europe. Here we present a draft genome sequence of P. plurivora, originally isolated from diseased European beech (Fagus sylvatica) in Malmö, Sweden. When compared with other sequenced Phytophthora species, the P. plurivora genome assembly is relatively compact, spanning 41 Mb. This is organized in 1,919 contigs and 1,898 scaffolds, encompassing 11,741 predicted genes, and has a repeat content of approximately 15%. Comparison of allele frequencies revealed evidence for tetraploidy in the sequenced isolate. As in other sequenced Phytophthora species, P. plurivora possesses genes for pathogenicity-associated RXLR and Crinkle and Necrosis effectors, predominantly located in gene-sparse genomic regions. Comparison of the P. plurivora RXLR effectors with orthologs in other sequenced species in the same clade (Phytophthora multivora and Phytophthora capsici) revealed that the orthologs were likely to be under neutral or purifying selection.
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