Evidence map›Paper›PMID 30059005›Full record

ArticleeLife2018

An alternative splicing switch in FLNB promotes the mesenchymal cell state in human breast cancer.

Ji Li, Peter S Choi, Christine L Chaffer, Katherine Labella, Justin H Hwang, Andrew O Giacomelli, Jong Wook Kim, Nina Ilic, John G Doench, Seav Huong Ly and 11 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed, 123 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Filamin C activates MAPK/ERK signaling to facilitate epithelial-mesenchymal transition in bladder cancer.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Article
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  6. Haematologica · 2026
    Article
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  20. Review

23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 2 countries.

Ji Li *Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, United States.ORCID http://orcid.org/0000-0002-9075-0432
Peter S Choi *Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, United States.ORCID http://orcid.org/0000-0002-2820-3032
Christine L ChafferWhitehead Institute for Biomedical Research and MIT, Cambridge, United States.
Katherine LabellaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, United States.
Justin H HwangDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, United States.
Andrew O GiacomelliDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, United States.ORCID http://orcid.org/0000-0003-2109-0458
Jong Wook KimDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, United States.
Nina IlicDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, United States.
John G DoenchBroad Institute of MIT and Harvard, Cambridge, United States.
Seav Huong LyDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, United States.
Chao DaiDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, United States.
Kimberly HagelDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, United States.
Andrew L HongDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, United States.ORCID http://orcid.org/0000-0003-0374-1667
Ole GjoerupDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, United States.
Shom GoelHarvard Medical School, Boston, United States.
Jennifer Y GeDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, United States.
David E RootBroad Institute of MIT and Harvard, Cambridge, United States.
Jean J ZhaoHarvard Medical School, Boston, United States.
Angela N BrooksUniversity of California, Santa Cruz, Santa Cruz, United States.
Robert A WeinbergWhitehead Institute for Biomedical Research and MIT, Cambridge, United States.
William C HahnDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, United States.ORCID http://orcid.org/0000-0003-2840-9791
Broad Institute · USHarvard University · USBoston University · USGarvan Institute of Medical Research · AUUniversity of California, Santa Cruz · USWhitehead Institute for Biomedical Research · US

Funding

Integrating targeted therapy and immunotherapy to break through cancerR35CA210057 · NCI · DANA-FARBER CANCER INST · PI Jean Zhao · 2016 to 2026
$10.8M
The Dana-Farber Cancer Institute Cancer Target Discovery and Development CenterU01CA176058 · NCI · DANA-FARBER CANCER INST · PI HAHN, WILLIAM C. · 2013 to 2021
$7.8M
Regulation and function of IKKe in breast cancer initiation and maintenanceR01CA130988 · NCI · DANA-FARBER CANCER INST · PI HAHN, WILLIAM C. · 2009 to 2018
$3.5M
Investigating the role of RBM10-regulated alternative splicing in lung tumorigenesisK99CA208028 · NCI · DANA-FARBER CANCER INST · PI CHOI, PETER S. · 2016 to 2017
$266k
NCI NIH HHS K99 CA208028NCI NIH HHS R01 CA130988NCI NIH HHS R35 CA210057NCI NIH HHS U01 CA176058Susan G. Komen PDF14300517
6 · The paper itself

Abstract

Alternative splicing of mRNA precursors represents a key gene expression regulatory step and permits the generation of distinct protein products with diverse functions. In a genome-scale expression screen for inducers of the epithelial-to-mesenchymal transition (EMT), we found a striking enrichment of RNA-binding proteins. We validated that QKI and RBFOX1 were necessary and sufficient to induce an intermediate mesenchymal cell state and increased tumorigenicity. Using RNA-seq and eCLIP analysis, we found that QKI and RBFOX1 coordinately regulated the splicing and function of the actin-binding protein FLNB, which plays a causal role in the regulation of EMT. Specifically, the skipping of FLNB exon 30 induced EMT by releasing the FOXC1 transcription factor. Moreover, skipping of FLNB exon 30 is strongly associated with EMT gene signatures in basal-like breast cancer patient samples. These observations identify a specific dysregulation of splicing, which regulates tumor cell plasticity and is frequently observed in human cancer.

Indexed as

Alternative SplicingAnimalsBase SequenceBreast NeoplasmsCell Line, TumorEpithelial-Mesenchymal TransitionExonsFemaleFilaminsGene Expression Regulation, NeoplasticGenome, HumanHumansHyaluronan ReceptorsMesenchymal Stem CellsMice, NudeNeoplasm ProteinsFilaminsFLNB protein, humanHyaluronan ReceptorsNeoplasm ProteinsProtein IsoformsRNA-Binding ProteinsRNA, Messengeralternative splicingbasal-like breast cancercancer biologycell biologyEMTFLNBhumanmouseQKIRBFOX1

Identifiers

PMID30059005
PMCPMC6103745
OpenAlexW2884817551

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.