Evidence map›Paper›PMID 30058229›Full record

ArticleProtein science : a publication of the Protein Society2018

Adaptation of the bound intrinsically disordered protein YAP to mutations at the YAP:TEAD interface.

Yannick Mesrouze, Fedir Bokhovchuk, Aude Izaac, Marco Meyerhofer, Catherine Zimmermann, Patrizia Fontana, Tobias Schmelzle, Dirk Erdmann, Pascal Furet, Joerg Kallen and 1 more

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Bioinformatics advances · 2022
    Article
  12. Article
  13. Study of the TEAD-binding domain of the YAP protein from animal species.Protein science : a publication of the Protein Society · 2021
    Article
  14. Matrin3: Disorder and ALS Pathogenesis.Frontiers in molecular biosciences · 2021
    Review
  15. Article
  16. Templated folding of intrinsically disordered proteins.The Journal of biological chemistry · 2020
    Review
  17. Identification of FAM181A and FAM181B as new interactors with the TEAD transcription factors.Protein science : a publication of the Protein Society · 2020
    Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yannick MesrouzeDisease Area Oncology, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Fedir BokhovchukDisease Area Oncology, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Aude IzaacChemical Biology & Therapeutics, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Marco MeyerhoferDisease Area Oncology, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Catherine ZimmermannDisease Area Oncology, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Patrizia FontanaDisease Area Oncology, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Tobias SchmelzleDisease Area Oncology, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Dirk ErdmannDisease Area Oncology, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Pascal FuretGlobal Discovery Chemistry, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Joerg KallenChemical Biology & Therapeutics, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Patrick ChèneDisease Area Oncology, Novartis Institutes for Biomedical Research, Basel, Switzerland.ORCID 0000-0002-6010-9169

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many interactions between proteins are mediated by intrinsically disordered regions (IDRs). Intrinsically disordered proteins (IDPs) do not adopt a stable three-dimensional structure in their unbound form, but they become more structured upon binding to their partners. In this communication, we study how a bound IDR adapts to mutations, preventing the formation of hydrogen bonds at the binding interface that needs a precise positioning of the interacting residues to be formed. We use as a model the YAP:TEAD interface, where one YAP (IDP) and two TEAD residues form hydrogen bonds via their side chain. Our study shows that the conformational flexibility of bound YAP and the reorganization of water molecules at the interface help to reduce the energetic constraints created by the loss of H-bonds at the interface. The residual flexibility/dynamic of bound IDRs and water might, therefore, be a key for the adaptation of IDPs to different interface landscapes and to mutations occurring at binding interfaces.

Indexed as

Intrinsically Disordered ProteinsMutationProtein BindingProtein ConformationThermodynamicsWaterIntrinsically Disordered ProteinsWaterintrinsically disordered proteinsprotein-protein interactionsTEADwaterYAP

Identifiers

PMID30058229
PMCPMC6199158

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.