Evidence map›Paper›PMID 30057854›Full record

ArticleWestern Pacific surveillance and response journal : WPSAR

Retrospective use of whole genome sequencing to better understand an outbreak of

Cassia Lindsay, James Flint, Kim Lilly, Kirsty Hope, Qinning Wang, Peter Howard, Vitali Sintchenko, David N Durrheim

Open access · diamondAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Western Pacific surveillance and response journal : WPSAR. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Cassia LindsayHunter New England Health, New South Wales, Australia.
James FlintHunter New England Health, New South Wales, Australia.
Kim LillyHunter New England Health, New South Wales, Australia.
Kirsty HopeHealth Protection NSW, New South Wales, Australia.
Qinning WangCentre for Infectious Diseases and Microbiology, Institute of Clinical Pathology and Medical Research, Westmead Hospital, New South Wales, Australia.
Peter HowardCentre for Infectious Diseases and Microbiology, Institute of Clinical Pathology and Medical Research, Westmead Hospital, New South Wales, Australia.
Vitali SintchenkoCentre for Infectious Diseases and Microbiology, Institute of Clinical Pathology and Medical Research, Westmead Hospital, New South Wales, Australia.
David N DurrheimHunter New England Health, New South Wales, Australia.
Hunter New England Local Health District · AUWestmead Hospital · AUNew South Wales Department of Health · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introduction

methodsIn February 2016, an increase in

resultsWGS analysis distinguished the original outbreak cases ( DISCUSSION: WGS has been widely acknowledged as a promising high-resolution typing tool for enteric pathogens. This study was one of the first to apply WGS to a geographically limited cluster of salmonellosis in Australia. WGS clearly distinguished the outbreak cases into distinct clusters, demonstrating its potential value for use in real time to support non-point source foodborne disease outbreaks of limited geographical spread.

Indexed as

Disease OutbreaksWhole Genome SequencingAdolescentAdultAgedAged, 80 and overChildChild, PreschoolCluster AnalysisFemaleHumansInfantMaleMiddle AgedNew South WalesPublic Health Surveillance

Identifiers

PMID30057854
PMCPMC6059765
OpenAlexW2883555690

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.