Evidence map›Paper›PMID 30055169›Full record

ArticleGastroenterology2018

Sox4 Promotes Atoh1-Independent Intestinal Secretory Differentiation Toward Tuft and Enteroendocrine Fates.

Adam D Gracz, Leigh Ann Samsa, Matthew J Fordham, Danny C Trotier, Bailey Zwarycz, Yuan-Hung Lo, Katherine Bao, Joshua Starmer, Jesse R Raab, Noah F Shroyer and 2 more

Open access · greenAbstract read
In one paragraph

Article in Gastroenterology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
8.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 99 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Developmental regulation of intestinalbioRxiv : the preprint server for biology · 2025
    Article
  8. Article
  9. Article
  10. Review
  11. Advances in Single-Cell Sequencing for Infectious Diseases: Progress and Perspectives.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  12. Article
  13. Article
  14. Article
  15. Tet1 safeguards lineage allocation in intestinal stem cells.bioRxiv : the preprint server for biology · 2025
    Article
  16. Therapeutic targeting of the NOTCH1 and neddylation pathways in T cell acute lymphoblastic leukemia.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  17. Article
  18. Review
  19. Tuft cells in the intestine, immunity and beyond.Nature reviews. Gastroenterology & hepatology · 2024
    Review
  20. Review

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Adam D GraczDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina. Electronic address: agracz@med.unc.edu.
Leigh Ann SamsaDepartment of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina.
Matthew J FordhamDepartment of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina.
Danny C TrotierDepartment of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina.
Bailey ZwaryczDepartment of Cell Biology and Physiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina.
Yuan-Hung LoDepartment of Medicine, Section of Gastroenterology and Hepatology, Baylor College of Medicine, Houston, Texas.
Katherine BaoDepartment of Immunology, Duke University, Durham, North Carolina.
Joshua StarmerDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina.
Jesse R RaabDepartment of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina.
Noah F ShroyerDepartment of Medicine, Section of Gastroenterology and Hepatology, Baylor College of Medicine, Houston, Texas.
R Lee ReinhardtDepartment of Immunology, Duke University, Durham, North Carolina.
Scott T MagnessDepartment of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina; Department of Cell Biology and Physiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina; Joint Department of Biomedical Engineering, University of North Carolina at Chapel Hill/North Carolina State University, Chapel Hill, North Carolina. Electronic address: magness@med.unc.edu.
University of North Carolina at Chapel Hill · USBaylor College of Medicine · USDuke University · USNorth Carolina State University · US

Funding

PILOT AND FEASIBILITY STUDIESP30DK034987 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Temitope O. Keku · 1985 to 2026
$30.5M
Tissue Analysis & Molecular Imaging CoreP30DK056338 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI James Versalovic · 2001 to 2026
$28.3M
GASTROENTEROLOGY RESEARCH TRAININGT32DK007737 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SHEHZAD Z. SHEIKH · 1996 to 2026
$7.8M
Basic Immunology Training ProgramT32AI052077 · NIAID · DUKE UNIVERSITY · PI KRANGEL, MICHAEL S · 2002 to 2024
$4.2M
The Role of BATF in Allergic Inflammation and Anti-Helminth ImmunityR01AI119004 · NIAID · NATIONAL JEWISH HEALTH · PI REINHARDT, RICHARD LEE · 2015 to 2019
$1.8M
Genetic Control of Intestinal Epithelial Stem Cell Maintenance & DifferentiationR01DK091427 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MAGNESS, SCOTT T · 2011 to 2015
$1.6M
KLF5 regulation of intestinal development and stem cell homeostasis.R01DK092306 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI SHROYER, NOAH FREEMAN · 2011 to 2014
$1.6M
The role of ATOH1 as a tumor suppressor in colorectal cancerR01CA142826 · NCI · CINCINNATI CHILDRENS HOSP MED CTR · PI SHROYER, NOAH FREEMAN · 2010 to 2014
$1.5M
Mechanisms and function of Tet1 regulated gene networks in intestinal stem cell biologyK01DK111709 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GRACZ, ADAM DAVID · 2016 to 2019
$389k
TRANSCRIPTION FACTORS IN INTESTINAL DIFFERENTIATION AND CANCERF99CA212433 · NCI · BAYLOR COLLEGE OF MEDICINE · PI LO, YUAN-HUNG · 2016 to 2016
$45k
NCI NIH HHS F99 CA212433NCI NIH HHS R01 CA142826NIAID NIH HHS R01 AI119004NIAID NIH HHS T32 AI052077NIDDK NIH HHS K01 DK111709NIDDK NIH HHS P30 DK034987NIDDK NIH HHS P30 DK056338NIDDK NIH HHS R01 DK091427NIDDK NIH HHS R01 DK092306NIDDK NIH HHS T32 DK007737
6 · The paper itself

Abstract

BACKGROUND &

aimsThe intestinal epithelium is maintained by intestinal stem cells (ISCs), which produce postmitotic absorptive and secretory epithelial cells. Initial fate specification toward enteroendocrine, goblet, and Paneth cell lineages requires the transcription factor Atoh1, which regulates differentiation of the secretory cell lineage. However, less is known about the origin of tuft cells, which participate in type II immune responses to parasite infections and appear to differentiate independently of Atoh1. We investigated the role of Sox4 in ISC differentiation.

methodsWe performed experiments in mice with intestinal epithelial-specific disruption of Sox4 (Sox4

resultsSox4cKO mice had impaired ISC function and secretory differentiation, resulting in decreased numbers of tuft and enteroendocrine cells. In control mice, numbers of SOX4

conclusionsWe found Sox4 promoted tuft and enteroendocrine cell lineage allocation independently of Atoh1. These results challenge the longstanding model in which Atoh1 is the sole regulator of secretory differentiation in the intestine and are relevant for understanding epithelial responses to parasitic infection.

Indexed as

AnimalsBasic Helix-Loop-Helix ProteinsCell DifferentiationCell LineageEnteroendocrine CellsGoblet CellsHyaluronan ReceptorsIntestinal MucosaMiceSOXC Transcription FactorsAtoh1 protein, mouseBasic Helix-Loop-Helix ProteinsCd44 protein, mouseHyaluronan ReceptorsSox4 protein, mouseSOXC Transcription FactorsDifferentiationIntestinal CryptStem CellTranscriptional Regulation

Identifiers

PMID30055169
PMCPMC6232678
OpenAlexW2884303970

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.