Evidence map›Paper›PMID 30054815›Full record

ArticleJournal of microbiology (Seoul, Korea)2018

Variation of cassiicolin genes among Chinese isolates of Corynespora cassiicola.

Jun Wu, Xuewen Xie, Yanxia Shi, Ali Chai, Qi Wang, Baoju Li

Erratum issuedAbstract read
PubMed Publisher
In one paragraph

Article in Journal of microbiology (Seoul, Korea), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Quantifying Airborne Dispersal Route ofFrontiers in microbiology · 2021
    Article
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Jun WuInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 10081, P. R. China.
Xuewen XieInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 10081, P. R. China.
Yanxia ShiInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 10081, P. R. China.
Ali ChaiInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 10081, P. R. China.
Qi WangDepartment of Plant Pathology, China Agricultural University, Beijing, 100094, P. R. China.
Baoju LiInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 10081, P. R. China. libaojuivf@163.com.
Institute of Vegetables and Flowers · CNChinese Academy of Agricultural Sciences · CNChina Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Corynespora cassiicola is a species of fungus that is a plant pathogen of many agricultural crop plants, including severe target spot disease on cucumber. Cassiicolin is an important effector of pathogenicity of this fungus. In this study, we collected 141 Corynespora isolates from eighteen hosts, and the casscolin gene was detected in 82 C. cassiicola strains. The deduced protein sequences revealed that 72 isolates contained the Cas2 gene, two strains from Gynura bicolor harboured the Cas2.2 gene, and 59 isolates without a cassiicolin gene were classified as Cas0. Phylogenetic analyses was performed for the 141 isolates using four loci (ITS, ga4, caa5, and act1) and revealed two genetic clusters. Cluster A is composed of four subclades: subcluster A1 includes all Cas2 isolates plus 18 Cas0 strains, subcluster A2 includes the eight Cas5 isolates and one Cas0 isolate, and subclusters A3 and A4 contain Cas0 strains. Cluster B consists of 21 Cas0 isolates. Twenty-two C. cassiicola strains from different toxin classes showed varying degrees of virulence against cucumber. Cas0 or Cas2 strains induced diverse responses on cucumber, from no symptoms to symptoms of moderate or severe infection, but all Cas5 isolates exhibited avirulence on cucumber.

Indexed as

Genetic VariationAmino Acid SequenceAscomycotaChinaCucumis sativusDNA, FungalFungal ProteinsMycotoxinsPhylogenyPlant DiseasesSequence AlignmentSequence Analysis, DNAVirulenceVirulence Factorscassiicolin, Corynespora cassiicolaDNA, FungalFungal ProteinsMycotoxinsVirulence FactorsCorynespora cassiicolanucleotide and protein sequence characterisationsphylogenytoxin class

Identifiers

PMID30054815
OpenAlexW2885020942

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.