Evidence map›Paper›PMID 30054012›Full record

ArticleMolecular immunology2019

Genome-wide analyses and functional profiling of human NK cell lines.

Justin T Gunesch, Laura S Angelo, Sanjana Mahapatra, Raquel P Deering, Johanna E Kowalko, Patrick Sleiman, John W Tobias, Linda Monaco-Shawver, Jordan S Orange, Emily M Mace

Open access · greenAbstract read
In one paragraph

Article in Molecular immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 1 synthesis or guideline pooled it, 57 citations in OpenAlex.

  1. Pooled it
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  6. CXCR4 coordinates adhesion, migration, and development of human NK cells.bioRxiv : the preprint server for biology · 2026
    Article
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  20. Deletion of theProceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Justin T GuneschDepartment of Pediatrics, Baylor College of Medicine, Houston, TX, USA; Center for Human Immunobiology, Texas Children's Hospital, Houston, TX, USA; Department of Pathology, Baylor College of Medicine, Houston, TX, USA.
Laura S AngeloDepartment of Pediatrics, Baylor College of Medicine, Houston, TX, USA; Center for Human Immunobiology, Texas Children's Hospital, Houston, TX, USA.
Sanjana MahapatraDepartment of Pediatrics, Baylor College of Medicine, Houston, TX, USA; Center for Human Immunobiology, Texas Children's Hospital, Houston, TX, USA; Department of Pathology, Baylor College of Medicine, Houston, TX, USA.
Raquel P DeeringChildren's Hospital of Philadelphia, Philadelphia, PA, USA.
Johanna E KowalkoChildren's Hospital of Philadelphia, Philadelphia, PA, USA.
Patrick SleimanChildren's Hospital of Philadelphia, Philadelphia, PA, USA.
John W TobiasPenn Genomic Analysis Core, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA USA.
Linda Monaco-ShawverChildren's Hospital of Philadelphia, Philadelphia, PA, USA.
Jordan S OrangeDepartment of Pediatrics, Columbia University Irving Medical Center, New York, NY, USA.
Emily M MaceDepartment of Pediatrics, Columbia University Irving Medical Center, New York, NY, USA. Electronic address: em3375@cumc.columbia.edu.
Children's Hospital of Philadelphia · USBaylor College of Medicine · USColumbia University Irving Medical Center · USUniversity of Pennsylvania · US

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI DAVID R ROWLEY · 2007 to 2026
$73.9M
GENETIC, IMMUNOLOGIC AND MECHANISTIC BASIS OF HUMAN NK CELL DEFICIENCYR01AI120989 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ORANGE, JORDAN SCOTT · 2016 to 2025
$7.7M
Directing Function at the Natural Killer Cell Secretory Immunological SynapseR01AI067946 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ORANGE, JORDAN SCOTT · 2007 to 2019
$4.8M
Directing Function at the Natural Killer Cell Secretory Immunological SynapseR37AI067946 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Jordan Scott Orange · 2024 to 2026
$1.5M
NCI NIH HHS P30 CA125123NIAID NIH HHS R01 AI067946NIAID NIH HHS R01 AI120989NIAID NIH HHS R37 AI067946
6 · The paper itself

Abstract

Natural killer (NK) cell lines, including YTS, NK92, NK3.3, and NKL, represent excellent models for the study of human natural killer cells. While phenotypic and functional differences between these cell lines have been reported, a multi-parametric study, encompassing genomic, phenotypic, and functional assays, has not been performed. Here, using a combination of techniques including microarray and copy number analyses, flow cytometry, and functional assays, we provide in-depth genetic, functional, and phenotypic comparison of YTS, NK92, NK3.3, and NKL cell lines. Specifically, we found that while the cell lines shared similarities in enrichment of growth and survival pathways, they had differential expression of 557 genes, including genes related to NK cell development, survival, and function. In addition, we provide genetic and phenotypic analyses that demonstrate distinct developmental origins of NK92, YTS, and NKL cell lines. Specifically, NK92 has a phenotype associated with the CD56

Indexed as

CD56 AntigenCell LineFlow CytometryGenome-Wide Association StudyHumansKiller Cells, NaturalCD56 AntigenCD56Cell lineCytotoxicityNK cellNK cell phenotype

Identifiers

PMID30054012
PMCPMC6345623
OpenAlexW2884683055

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.