Evidence map›Paper›PMID 30052296›Full record

ArticleProtein science : a publication of the Protein Society2018

A new structural class of bacterial thioester domains reveals a slipknot topology.

Ona K Miller, Mark J Banfield, Ulrich Schwarz-Linek

Open access · hybridAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. The long and the short of Periscope Proteins.Biochemical Society transactions · 2022
    Review
  4. Article
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Ona K MillerBiomedical Sciences Research Complex and School of Biology, University of St Andrews, St Andrews, KY16 9ST, United Kingdom.
Mark J BanfieldJohn Innes Centre, Department of Biological Chemistry, Norwich Research Park, Norwich, NR4 7UH, United Kingdom.
Ulrich Schwarz-LinekBiomedical Sciences Research Complex and School of Biology, University of St Andrews, St Andrews, KY16 9ST, United Kingdom.ORCID 0000-0003-0526-223X
University of St Andrews · GBJohn Innes Centre · GB

Funding

Biotechnology and Biological Sciences Research Council BB/J00453Diamond Light Source MX10071Diamond Light Source MX14980John Innes FoundationMedical Research Council MR/K001485Medical Research Council MR/K001485/1
6 · The paper itself

Abstract

An increasing number of surface-associated proteins identified in Gram-positive bacteria are characterized by intramolecular cross-links in structurally conserved thioester, isopeptide, and ester domains (TIE proteins). Two classes of thioester domains (TEDs) have been predicted based on sequence with, to date, only representatives of Class I structurally characterized. Here, we present crystal structures of three Class II TEDs from Bacillus anthracis, vancomycin-resistant Staphylococcus aureus, and vancomycin-resistant Enterococcus faecium. These proteins are structurally distinct from Class I TEDs due to a β-sandwich domain that is inserted into the conserved TED fold to form a slipknot structure. Further, the B. anthracis TED domain is presented in the context of a full-length sortase-anchored protein structure (BaTIE). This provides insight into the three-dimensional arrangement of TIE proteins, which emerge as very abundant putative adhesins of Gram-positive bacteria.

Indexed as

Bacillus anthracisBacterial ProteinsEstersModels, MolecularProtein ConformationStaphylococcus aureusSulfur CompoundsVancomycin-Resistant EnterococciBacterial ProteinsEstersSulfur CompoundsBacillus anthracisbacterial surface proteinscrystal structuresEnterococcus faeciumStaphylococcus aureusthioester domainsTIE proteins

Identifiers

PMID30052296
PMCPMC6194298
OpenAlexW2886469344

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.