Evidence map›Paper›PMID 30051274›Full record

ArticleJournal of industrial microbiology & biotechnology2018

Biodegradation of lignin by Pseudomonas sp. Q18 and the characterization of a novel bacterial DyP-type peroxidase.

Chenxian Yang, Fangfang Yue, Yanlong Cui, Yuanmei Xu, Yuanyuan Shan, Bianfang Liu, Yuan Zhou, Xin Lü

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Journal of industrial microbiology & biotechnology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
8.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 55 citations in OpenAlex.

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  11. Degradation of switchgrass byFrontiers in microbiology · 2022
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  15. A Novel Polyphenol Oxidoreductase OhLac fromFrontiers in microbiology · 2021
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  16. Article
  17. Review
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Chenxian YangCollege of Food Science and Engineering, Northwest A&F University, Yangling District, Xianyang, 712100, Shaanxi Province, China.
Fangfang YueCollege of Food Science and Engineering, Northwest A&F University, Yangling District, Xianyang, 712100, Shaanxi Province, China.
Yanlong CuiCollege of Food Science and Engineering, Northwest A&F University, Yangling District, Xianyang, 712100, Shaanxi Province, China.
Yuanmei XuCollege of Food Science and Engineering, Northwest A&F University, Yangling District, Xianyang, 712100, Shaanxi Province, China.
Yuanyuan ShanCollege of Food Science and Engineering, Northwest A&F University, Yangling District, Xianyang, 712100, Shaanxi Province, China.
Bianfang LiuCollege of Food Science and Engineering, Northwest A&F University, Yangling District, Xianyang, 712100, Shaanxi Province, China.
Yuan ZhouCollege of Food Science and Engineering, Northwest A&F University, Yangling District, Xianyang, 712100, Shaanxi Province, China.
Xin LüCollege of Food Science and Engineering, Northwest A&F University, Yangling District, Xianyang, 712100, Shaanxi Province, China. xinlu@nwsuaf.edu.cn.
Northwest A&F University · CN

Funding

Agro-scientific Research in the Public Interest 201503135
6 · The paper itself

Abstract

Lignin valorization can be obtained through cleavage of selected bonds by microbial enzymes, in which lignin is segregated from cellulose and hemicellulose and abundant phenolic compounds can be provided. In this study, Pseudomonas sp. Q18, previously isolated from rotten wood in China, was used to degrade alkali lignin and raw lignocellulosic material. Gel-permeation chromatography, field-emission scanning electron microscope, and GC-MS were combined to investigate the degradation process. The GC-MS results revealed that the quantities of aromatic compounds with phenol ring from lignin increased significantly after incubation with Pseudomonas sp. Q18, which indicated the degradation of lignin. According to the lignin-derived metabolite analysis, it was proposed that a DyP-type peroxidase (PmDyP) might exist in strain Q18. Thereafter, the gene of PmDyP was cloned and expressed, after which the recombinant PmDyP was purified and the enzymatic kinetics of PmDyP were assayed. According to results, PmDyP showed promising characteristics for lignocellulosic biodegradation in biorefinery.

Indexed as

Biodegradation, EnvironmentalBacteriaCelluloseChinaColoring AgentsComputational BiologyGenetic EngineeringLigninMicroscopy, Electron, ScanningPeroxidasesPhenolPhylogenyPolysaccharidesPseudomonasWoodCelluloseColoring AgentshemicelluloseLigninlignocellulosePeroxidasesPhenolPolysaccharidesCharacterizationDegradationLigninPmDyPPseudomonas sp. Q18

Identifiers

PMID30051274
OpenAlexW2883591620

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.