Evidence map›Paper›PMID 30050061›Full record

ArticleHeredity2019

Application of partial least squares in exploring the genome selection signatures between populations.

Hao Sun, Zhe Zhang, Babatunde Shittu Olasege, Zhong Xu, Qingbo Zhao, Peipei Ma, Qishan Wang, Yuchun Pan

Open access · bronzeAbstract read
In one paragraph

Article in Heredity, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Hao SunDepartment of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China.
Zhe ZhangDepartment of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China.
Babatunde Shittu OlasegeDepartment of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China.
Zhong XuDepartment of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China.
Qingbo ZhaoDepartment of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China.
Peipei MaDepartment of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China.
Qishan WangDepartment of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China. wangqishan@sjtu.edu.cn.
Yuchun PanDepartment of Animal Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, People's Republic of China. panyuchun1963@aliyun.com.
Shanghai Jiao Tong University · CNShanghai Veterinary Research Institute · CN

Funding

National Natural Science Foundation of China (National Science Foundation of China) 31772552National Natural Science Foundation of China (National Science Foundation of China) U1402266
6 · The paper itself

Abstract

Natural and artificial selection have led to substantial variation in the phenotypic traits of different populations. Therefore, there is a need to develop methods that are based on cross-population comparisons to discover loci related to specific traits. Here, we suggested a strategy to detect the genome selection signatures between populations based on the partial least squares (PLS) theory. Using the binary population indicator as the response variable in the PLS analysis, alleles under selection between populations were identified from the first PLS component. We explored the theory behind the PLS analysis to reveal its usefulness in detecting the loci under selection. Through the simulation study, the results showed that the PLS method had a better performance than the F

Indexed as

Genetics, PopulationGenomeLeast-Squares AnalysisModels, GeneticSelection, GeneticAlgorithmsAnimalsEvolution, MolecularHumansSwine

Identifiers

PMID30050061
PMCPMC6460753
OpenAlexW2884237641

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.