Evidence map›Paper›PMID 30048467›Full record

ArticlePloS one2018

Genome-wide analysis of ATP binding cassette (ABC) transporters in tomato.

Peter Amoako Ofori, Ayaka Mizuno, Mami Suzuki, Enrico Martinoia, Stefan Reuscher, Koh Aoki, Daisuke Shibata, Shungo Otagaki, Shogo Matsumoto, Katsuhiro Shiratake

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
18.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 136 citations in OpenAlex.

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  17. The ectomycorrhizal fungusFrontiers in microbiology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Peter Amoako OforiGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan.
Ayaka MizunoGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan.
Mami SuzukiGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan.
Enrico MartinoiaDepartment of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland.
Stefan ReuscherGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan.
Koh AokiGraduate School of Life and Environmental Sciences, Osaka Prefecture University, Sakai, Japan.
Daisuke ShibataKazusa DNA Research Institute, Kisarazu, Japan.
Shungo OtagakiGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan.
Shogo MatsumotoGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan.
Katsuhiro ShiratakeGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan.ORCID 0000-0002-2608-7912
Nagoya University · JPKazusa DNA Research Institute · JPOsaka Prefecture University · JPUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ATP binding cassette (ABC) transporters are proteins that actively mediate the transport of a wide range of molecules, such as organic acids, metal ions, phytohormones and secondary metabolites. Therefore, ABC transporters must play indispensable roles in growth and development of tomato, including fruit development. Most ABC transporters have transmembrane domains (TMDs) and belong to the ABC protein family, which includes not only ABC transporters but also soluble ABC proteins lacking TMDs. In this study, we performed a genome-wide identification and expression analysis of genes encoding ABC proteins in tomato (Solanum lycopersicum), which is a valuable horticultural crop and a model plant for studying fleshy fruits. In the tomato genome, a total of 154 genes putatively encoding ABC transporters, including 9 ABCAs, 29 ABCBs, 26 ABCCs, 2 ABCDs, 2 ABCEs, 6 ABCFs, 70 ABCGs and 10 ABCIs, were identified. Gene expression data from the eFP Browser and reverse transcription-semi-quantitative PCR analysis revealed their tissue-specific and development-specific expression profiles. This work suggests physiological roles of ABC transporters in tomato and provides fundamental information for future studies of ABC transporters not only in tomato but also in other Solanaceae species.

Indexed as

ATP-Binding Cassette TransportersGene Expression ProfilingGene Expression Regulation, PlantGenome, PlantGenome-Wide Association StudyPlant ProteinsSolanum lycopersicumATP-Binding Cassette TransportersPlant Proteins

Identifiers

PMID30048467
PMCPMC6062036
OpenAlexW2883878702

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.