Evidence map›Paper›PMID 30046613›Full record

ArticleBioMed research international2018

Profiling of Stem/Progenitor Cell Regulatory Genes of the Synovial Joint by Genome-Wide RNA-Seq Analysis.

Yue Zhou, Mo Chen, Christopher L Ricupero, Ling He, Jiaqian Wu, Kenian Chen, Richard A Friedman, Paolo Guarnieri, Zuolin Wang, Xuedong Zhou and 1 more

Open access · hybridAbstract read
In one paragraph

Article in BioMed research international, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Yue ZhouState Key Laboratory of Oral Diseases, West China Hospital of Stomatology, West China School of Stomatology, Sichuan University, Chengdu 610041, China.ORCID 0000-0002-3948-1740
Mo ChenCenter for Craniofacial Regeneration, Columbia University Medical Center, 630 W. 168 St., PH7 East CDM, New York, NY 10032, USA.
Christopher L RicuperoCenter for Craniofacial Regeneration, Columbia University Medical Center, 630 W. 168 St., PH7 East CDM, New York, NY 10032, USA.
Ling HeCenter for Craniofacial Regeneration, Columbia University Medical Center, 630 W. 168 St., PH7 East CDM, New York, NY 10032, USA.
Jiaqian WuVivian L. Smith Department of Neurosurgery, Center for Stem Cell and Regenerative Medicine, University of Texas Medical School at Houston, Houston, TX 77030, USA.
Kenian ChenVivian L. Smith Department of Neurosurgery, Center for Stem Cell and Regenerative Medicine, University of Texas Medical School at Houston, Houston, TX 77030, USA.
Richard A FriedmanBiomedical Informatics Shared Resource, Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA.
Paolo GuarnieriBiomedical Informatics Shared Resource, Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA.
Zuolin WangShanghai Engineering Research Center of Tooth Restoration and Regeneration, School and Hospital of Stomatology, Tongji University, Shanghai 200072, China.ORCID 0000-0002-8230-8599
Xuedong ZhouState Key Laboratory of Oral Diseases, West China Hospital of Stomatology, West China School of Stomatology, Sichuan University, Chengdu 610041, China.ORCID 0000-0002-9319-7302
Jeremy J MaoCenter for Craniofacial Regeneration, Columbia University Medical Center, 630 W. 168 St., PH7 East CDM, New York, NY 10032, USA.ORCID 0000-0003-0776-0689
Columbia University Irving Medical Center · USSun Yat-sen University · CNTongji University · CNSichuan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Synovial joints suffer from arthritis and trauma that may be severely debilitative. Despite robust investigations in the roles of individual genes in synovial joint development and arthritis, little is known about global profiles of genes that regulate stem/progenitor cells of a synovial joint. The temporomandibular joint is a poorly understood synovial arthrosis with few clinical treatment options. Here, we isolated the articular and mature zones of the mandibular condyle by laser capture microdissection, performed genome-wide profiling, and analyzed molecular signaling pathways relevant to stem/progenitor cell functions. A total of 804 genes were differentially expressed between the articular and mature zones. Pathway analyses revealed 29 enriched signaling pathways, including the PI3K-Akt, Wnt, and Toll-like receptor signaling pathways that may regulate stem/progenitor cell homeostasis and differentiation into the chondrocyte lineage. Upstream regulator analyses further predicted potential upstream key regulators such as Xbp1, Nupr1, and Hif1a, and associated underlying mechanism networks were described. Among the multiple candidates of growth and transcriptional factors that may regulate stem/progenitor cells, we immunolocalized Sox9, Ihh, Frzb, Dkk1, Lgr5, and TGF

Indexed as

Chromosome MappingStem CellsTranscriptomeAnimalsCell DifferentiationChondrocytesJointsMiceRNARNA

Identifiers

PMID30046613
PMCPMC6038687
OpenAlexW2811394267

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.