Evidence map›Paper›PMID 30046159›Full record

ArticleScientific reports2018

Metabolomic analysis of mouse prefrontal cortex reveals upregulated analytes during wakefulness compared to sleep.

Allen K Bourdon, Giovanna Maria Spano, William Marshall, Michele Bellesi, Giulio Tononi, Pier Andrea Serra, Helen A Baghdoyan, Ralph Lydic, Shawn R Campagna, Chiara Cirelli

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. The why and how of sleep-dependent synaptic down-selection.Seminars in cell & developmental biology · 2022
    Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Allen K BourdonDepartment of Chemistry, University of Tennessee, Knoxville, TN, United States.ORCID 0000-0002-9373-1130
Giovanna Maria SpanoDepartment of Psychiatry, University of Wisconsin, Madison, Madison, WI, United States.
William MarshallDepartment of Psychiatry, University of Wisconsin, Madison, Madison, WI, United States.
Michele BellesiDepartment of Psychiatry, University of Wisconsin, Madison, Madison, WI, United States.
Giulio TononiDepartment of Psychiatry, University of Wisconsin, Madison, Madison, WI, United States.
Pier Andrea SerraDepartment of Clinical and Experimental Medicine, University of Sassari, Sassari, Italy.
Helen A BaghdoyanDepartment of Anesthesiology and Psychology, University of Tennessee, Knoxville, TN, United States.ORCID 0000-0003-0627-2448
Ralph LydicDepartment of Anesthesiology and Psychology, University of Tennessee, Knoxville, TN, United States.
Shawn R CampagnaDepartment of Chemistry, University of Tennessee, Knoxville, TN, United States. campagna@utk.edu.
Chiara CirelliDepartment of Psychiatry, University of Wisconsin, Madison, Madison, WI, United States. ccirelli@wisc.edu.

Funding

Electron Microscopy Core CP01NS083514 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI TONONI, GIULIO · 2014 to 2018
$7.7M
The cost of plasticity: from cells to systemsR01MH099231 · NIMH · UNIVERSITY OF WISCONSIN-MADISON · PI CIRELLI, CHIARA, TONONI, GIULIO · 2013 to 2017
$3.3M
CHOLINERGIC PHENOTYPE IN MURINE MODELS OF SLEEPR01HL065272 · NHLBI · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI LYDIC, RALPH · 1999 to 2013
$3.2M
NHLBI NIH HHS R01 HL065272NIMH NIH HHS R01 MH099231NINDS NIH HHS P01 NS083514
6 · The paper itself

Abstract

By identifying endogenous molecules in brain extracellular fluid metabolomics can provide insight into the regulatory mechanisms and functions of sleep. Here we studied how the cortical metabolome changes during sleep, sleep deprivation and spontaneous wakefulness. Mice were implanted with electrodes for chronic sleep/wake recording and with microdialysis probes targeting prefrontal and primary motor cortex. Metabolites were measured using ultra performance liquid chromatography-high resolution mass spectrometry. Sleep/wake changes in metabolites were evaluated using partial least squares discriminant analysis, linear mixed effects model analysis of variance, and machine-learning algorithms. More than 30 known metabolites were reliably detected in most samples. When used by a logistic regression classifier, the profile of these metabolites across sleep, spontaneous wake, and enforced wake was sufficient to assign mice to their correct experimental group (pair-wise) in 80-100% of cases. Eleven of these metabolites showed significantly higher levels in awake than in sleeping mice. Some changes extend previous findings (glutamate, homovanillic acid, lactate, pyruvate, tryptophan, uridine), while others are novel (D-gluconate, N-acetyl-beta-alanine, N-acetylglutamine, orotate, succinate/methylmalonate). The upregulation of the de novo pyrimidine pathway, gluconate shunt and aerobic glycolysis may reflect a wake-dependent need to promote the synthesis of many essential components, from nucleic acids to synaptic membranes.

Indexed as

MetabolomicsAnimalsGlutamic AcidHomovanillic AcidHumansLactic AcidMiceMotor CortexPrefrontal CortexPyruvic AcidSleepSleep DeprivationTryptophanUridineWakefulnessGlutamic AcidHomovanillic AcidLactic AcidPyruvic AcidTryptophanUridine

Identifiers

PMID30046159
PMCPMC6060152

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.