Evidence map›Paper›PMID 30045992›Full record

ArticleJournal of virology2018

Effect of Productive Human Papillomavirus 16 Infection on Global Gene Expression in Cervical Epithelium.

Sa Do Kang, Sreejata Chatterjee, Samina Alam, Anna C Salzberg, Janice Milici, Sjoerd H van der Burg, Craig Meyers

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 40 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Sa Do KangDepartment of Microbiology and Immunology, Penn State College of Medicine, Hershey, Pennsylvania, USA.ORCID https://orcid.org/0000-0001-9481-9823
Sreejata ChatterjeeDepartment of Microbiology and Immunology, Penn State College of Medicine, Hershey, Pennsylvania, USA.
Samina AlamDepartment of Microbiology and Immunology, Penn State College of Medicine, Hershey, Pennsylvania, USA.
Anna C SalzbergBioinformatics Core, Penn State College of Medicine, Hershey, Pennsylvania, USA.
Janice MiliciDepartment of Microbiology and Immunology, Penn State College of Medicine, Hershey, Pennsylvania, USA.
Sjoerd H van der BurgDepartment of Medical Oncology, Leiden University Medical Center, Leiden, The Netherlands.
Craig MeyersDepartment of Microbiology and Immunology, Penn State College of Medicine, Hershey, Pennsylvania, USA cmeyers@pennstatehealth.psu.edu.
Penn State Milton S. Hershey Medical Center · USLeiden University Medical Center · NLPennsylvania State University · US

Funding

ART On Oral Tissue Growth, Function, and HPV InfectionsR01DE018305 · NIDCR · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI MEYERS, CRAIG M · 2007 to 2011
$2.1M
NIDCR NIH HHS R01 DE018305
6 · The paper itself

Abstract

Human papillomavirus (HPV) infection is the world's most common sexually transmitted infection and is responsible for most cases of cervical cancer. Previous studies of global gene expression changes induced by HPV infection have focused on the cancerous stages of infection, and therefore, not much is known about global gene expression changes at early preneoplastic stages of infection. We show for the first time the global gene expression changes during early-stage HPV16 infection in cervical tissue using 3-dimensional organotypic raft cultures, which produce high levels of progeny virions. cDNA microarray analysis showed that a total of 594 genes were upregulated and 651 genes were downregulated at least 1.5-fold with HPV16 infection. Gene ontology analysis showed that biological processes including cell cycle progression and DNA metabolism were upregulated, while skin development, immune response, and cell death were downregulated with HPV16 infection in cervical keratinocytes. Individual genes were selected for validation at the transcriptional and translational levels, including

Indexed as

Host-Pathogen InteractionsCervix UteriEpitheliumFemaleGene Expression ProfilingGene OntologyHuman papillomavirus 16HumansMicroarray AnalysisModels, BiologicalOrgan Culture TechniquesPapillomavirus Infectionscervical cancerepitheliumHPV16keratinocytesmicroarrayspapillomavirustranscriptome

Identifiers

PMID30045992
PMCPMC6158420
OpenAlexW2894007181

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.