Evidence map›Paper›PMID 30045988›Full record

ArticleJournal of virology2018

Genetic Evidence Supports Sporadic and Independent Introductions of Subtype H5 Low-Pathogenic Avian Influenza A Viruses from Wild Birds to Domestic Poultry in North America.

Lei Li, Andrew S Bowman, Thomas J DeLiberto, Mary L Killian, Scott Krauss, Jacqueline M Nolting, Mia Kim Torchetti, Andrew M Ramey, Andrew B Reeves, David E Stallknecht and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
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  8. Reduced Influenza B-Specific Postvaccination Antibody Cross-reactivity in the B/Victoria Lineage-Predominant 2019/20 Season.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2021
    Article
  9. Continental-scale dynamics of avian influenza in U.S. waterfowl are driven by demography, migration, and temperature.Ecological applications : a publication of the Ecological Society of America · 2021
    Article
  10. Article
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  14. Ecological interventions to prevent and manage zoonotic pathogen spillover.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019
    Review
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  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Lei LiDepartment of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, USA.
Andrew S BowmanDepartment of Veterinary Preventive Medicine, The Ohio State University, Columbus, Ohio, USA.ORCID https://orcid.org/0000-0002-0738-8453
Thomas J DeLibertoNational Wildlife Disease Program, Wildlife Services, Animal and Plant Health Inspection Service, U.S. Department of Agriculture, Fort Collins, Colorado, USA.
Mary L KillianNational Veterinary Services Laboratories, Veterinary Services, U.S. Department of Agriculture, Ames, Iowa, USA.
Scott KraussDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Jacqueline M NoltingDepartment of Veterinary Preventive Medicine, The Ohio State University, Columbus, Ohio, USA.
Mia Kim TorchettiNational Veterinary Services Laboratories, Veterinary Services, U.S. Department of Agriculture, Ames, Iowa, USA.
Andrew M RameyU.S. Geological Survey, Alaska Science Center, Anchorage, Alaska, USA.
Andrew B ReevesU.S. Geological Survey, Alaska Science Center, Anchorage, Alaska, USA.
David E StallknechtSoutheastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, USA.
Richard J WebbyDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Xiu-Feng WanDepartment of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, USA wan@cvm.msstate.edu.ORCID https://orcid.org/0000-0003-2629-9234
Mississippi State University · USSt. Jude Children's Research Hospital · USThe Ohio State University · USUnited States Geological Survey · USAnimal and Plant Health Inspection Service · USUniversity of Georgia · US

Funding

Training and Mentoring Core P20GM103476 · NIGMS · UNIVERSITY OF SOUTHERN MISSISSIPPI · PI MICHAEL R GARRETT · 2012 to 2026
$60.2M
Genome Based Influenza Vaccine Strain Selection using Machine LearningR01AI116744 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI WAN, XIUFENG HENRY · 2015 to 2019
$1.9M
NIAID NIH HHS HHSN272201400006CNIAID NIH HHS R01 AI116744NIGMS NIH HHS P20 GM103476
6 · The paper itself

Abstract

Wild-bird origin influenza A viruses (IAVs or avian influenza) have led to sporadic outbreaks among domestic poultry in the United States and Canada, resulting in economic losses through the implementation of costly containment practices and destruction of birds. We used evolutionary analyses of virus sequence data to determine that 78 H5 low-pathogenic avian influenza viruses (LPAIVs) isolated from domestic poultry in the United States and Canada during 2001 to 2017 resulted from 18 independent virus introductions from wild birds. Within the wild-bird reservoir, the hemagglutinin gene segments of H5 LPAIVs exist primarily as two cocirculating genetic sublineages, and our findings suggest that the H5 gene segments flow within each migratory bird flyway and among adjacent flyways, with limited exchange between the nonadjacent Atlantic and Pacific Flyways. Phylogeographic analyses provided evidence that IAVs from dabbling ducks and swans/geese contributed to the emergence of viruses among domestic poultry. H5 LPAIVs isolated from commercial farm poultry (i.e., turkey) that were descended from a single introduction typically remained a single genotype, whereas those from live-bird markets sometimes led to multiple genotypes, reflecting the potential for reassortment with other IAVs circulating within live-bird markets. H5 LPAIVs introduced from wild birds to domestic poultry represent economic threats to the U.S. poultry industry, and our data suggest that such introductions have been sporadic, controlled effectively through production monitoring and a stamping-out policy, and are, therefore, unlikely to result in sustained detections in commercial poultry operations.

Indexed as

GenotypeInfluenza in BirdsPoultry DiseasesAnimalsInfluenza A Virus, H1N1 SubtypeInfluenza A Virus, H5N2 SubtypeNorth AmericaPhylogeographyPoultrybackyard poultrydabbling duckdomestic poultryevolutionary networkgoosegoose/swanlive-bird marketlow-pathogenic avian influenzaphylogeneticreassortmentsubtype H5swanUnited Stateswild birds

Identifiers

PMID30045988
PMCPMC6146819
OpenAlexW2884750589

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.