Evidence map›Paper›PMID 30043939›Full record

ArticleRevista do Instituto de Medicina Tropical de Sao Paulo2018

Phylogenetic analysis and genotype distribution of Hepatitis B Virus (HBV) in Roraima, Brazil.

Débora Dinelly de Sousa, Claudiane Raquel de Sousa Silva, Wilson Pereira Lima Junior, Jacqueline de Aguiar Barros, Ismael Alexandre da Silva Nascimento, Victor Costa de Souza, Felipe Gomes Naveca, Fabiana Granja

Abstract read
In one paragraph

Article in Revista do Instituto de Medicina Tropical de Sao Paulo, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Débora Dinelly de SousaUniversidade Federal de Roraima, Centro de Estudos da Biodiversidade, Laboratório de Biologia Molecular, Boa Vista, Roraima, Brazil.
Claudiane Raquel de Sousa SilvaUniversidade Federal de Roraima, Centro de Estudos da Biodiversidade, Laboratório de Biologia Molecular, Boa Vista, Roraima, Brazil.
Wilson Pereira Lima JuniorUniversidade Federal de Roraima, Centro de Estudos da Biodiversidade, Laboratório de Biologia Molecular, Boa Vista, Roraima, Brazil.
Jacqueline de Aguiar BarrosDepartamento de Vigilância Epidemiológica, Coordenação Geral de Vigilância em Saúde, SESAU/RR, Boa Vista, Roraima, Brazil.
Ismael Alexandre da Silva NascimentoUniversidade Federal de Roraima, Centro de Estudos da Biodiversidade, Laboratório de Biologia Molecular, Boa Vista, Roraima, Brazil.
Victor Costa de SouzaFiocruz-Amazônia, Instituto Leônidas e Maria Deane, Manaus, Amazonas, Brazil.
Felipe Gomes NavecaFiocruz-Amazônia, Instituto Leônidas e Maria Deane, Manaus, Amazonas, Brazil.
Fabiana GranjaUniversidade Federal de Roraima, Centro de Estudos da Biodiversidade, Laboratório de Biologia Molecular, Boa Vista, Roraima, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepatitis B virus (HBV) infection is a serious global health problem. HBV has a high viral genetic diversity, with 10 genotypes recognized. In Brazil, the Roraima State is the third in the Northern region regarding the number of hepatitis B cases. On the other hand, few data on HBV genotyping and phylogenetic analysis are available. The purpose of this study is to characterize the HBV genotypes circulating in Roraima State. Of the 113 chronic hepatitis B patients enrolled in this study, 40 were HBV-DNA positive. A fragment of 280 bp (S gene) was amplified by PCR and submitted to nucleotide sequencing. A dataset containing the viral sequences obtained in this study, plus 130 obtained from GenBank was used for genotyping by phylogenetic analysis. The HBV subgenotype distribution found was A1 (62.5%), A2 (7.5%), D2, D3, D4 (2.5%), F2a (12.5%), and F3 (10%). We characterized the genotypes and subgenotypes of HBV circulating among patients in the State of Roraima. In addition, our study shows for the first time the HBV/F3 genotype circulating in Brazil. In conclusion, our findings showed a high diversity of HBV genotypes in Roraima, which is also found in other Brazilian geographical regions.

Indexed as

GenotypePhylogenyAdultBase SequenceBrazilDatabases, Nucleic AcidDNA, ViralFemaleGenetic VariationHepatitis B, ChronicHepatitis B virusHumansMaleMiddle AgedPolymerase Chain ReactionPrevalenceDNA, Viral

Identifiers

PMID30043939
PMCPMC6056886

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