Evidence map›Paper›PMID 30043246›Full record

ArticleEuropean biophysics journal : EBJ2019

Correlative iPALM and SEM resolves virus cavity and Gag lattice defects in HIV virions.

Meike Pedersen, Shirin Jamali, Ipsita Saha, Rainer Daum, Mourad Bendjennat, Saveez Saffarian

Abstract read
In one paragraph

Article in European biophysics journal : EBJ, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Coexistence of vitreous and crystalline phases of HProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
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  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Meike PedersenFEI Deutschland GmbH, Frankfurt, Germany.
Shirin JamaliDept. of Physics and Astronomy, University of Utah, Salt Lake City, USA.
Ipsita SahaDept. of Physics and Astronomy, University of Utah, Salt Lake City, USA.
Rainer DaumFEI Deutschland GmbH, Frankfurt, Germany.
Mourad BendjennatDept. of Physics and Astronomy, University of Utah, Salt Lake City, USA.
Saveez SaffarianDept. of Physics and Astronomy, University of Utah, Salt Lake City, USA. saffarian@physics.utah.edu.

Funding

Directorate for Biological Sciences 1615076
6 · The paper itself

Abstract

Interferometric Photo-Activation-Localization-Microscopy (iPALM) localizes single fluorescent molecules with 20 nm lateral and 10 nm axial resolution. We present a method utilizing glass coverslip lithography for correlative imaging between iPALM and scanning electron microscopy (SEM). Using iPALM on HIV Gag-Dendra virus-like particles (VLPs) we localized the position of HIV Gag proteins. Based on these localizations we reconstructed the central cavity of the VLPs along with imperfections within the HIV Gag lattice. The SEM images and iPALM images overlap and show imaging from single VLPs immobilized on glass coverslips. The localization of many HIV proteins including accessory proteins and Gag-Pol remains unknown, we discuss how the specificity of iPALM coupled with SEM has the potential for resolving more of HIV proteins.

Indexed as

HIVInterferometryEquipment Designgag Gene Products, Human Immunodeficiency VirusGoldImaging, Three-DimensionalMetal NanoparticlesMicroscopy, Electron, ScanningViriongag Gene Products, Human Immunodeficiency VirusGoldCLEMGagHIViPALMSEM

Identifiers

PMID30043246
PMCPMC6330563

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.