Evidence map›Paper›PMID 30042172›Full record

ArticleRNA (New York, N.Y.)2018

Coregulation of alternative splicing by hnRNPM and ESRP1 during EMT.

Samuel E Harvey, Yilin Xu, Xiaodan Lin, Xin D Gao, Yushan Qiu, Jaegyoon Ahn, Xinshu Xiao, Chonghui Cheng

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it, 74 citations in OpenAlex.

  1. Alternative splicing and cancer: a systematic review.Signal transduction and targeted therapy · 2021
    Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Alternative Splicing in Embryo Implantation.Maternal-fetal medicine (Wolters Kluwer Health, Inc.) · 2025
    Review
  13. HnRNPM modulates alternative splicing in germ cells by recruiting PTBP1.Reproductive biology and endocrinology : RB&E · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Samuel E HarveyLester and Sue Smith Breast Center, Department of Molecular and Human Genetics, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, USA.
Yilin XuDivision of Hematology/Oncology, Robert H. Lurie Comprehensive Cancer Center, Feinberg School of Medicine, Northwestern University, Chicago, Illinois 60611, USA.
Xiaodan LinLester and Sue Smith Breast Center, Department of Molecular and Human Genetics, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, USA.
Xin D GaoDivision of Hematology/Oncology, Robert H. Lurie Comprehensive Cancer Center, Feinberg School of Medicine, Northwestern University, Chicago, Illinois 60611, USA.
Yushan QiuLester and Sue Smith Breast Center, Department of Molecular and Human Genetics, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, USA.
Jaegyoon AhnDepartment of Integrative Biology and Physiology and the Molecular Biology Institute, University of California Los Angeles, Los Angeles, California 90095, USA.
Xinshu XiaoDepartment of Integrative Biology and Physiology and the Molecular Biology Institute, University of California Los Angeles, Los Angeles, California 90095, USA.
Chonghui ChengLester and Sue Smith Breast Center, Department of Molecular and Human Genetics, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, USA.
Northwestern University · USUniversity of California, Los Angeles · US

Funding

Analysis of functional genetic variants in RNA processing and expressionU01HG009417 · NHGRI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI XIAO, XINSHU GRACE · 2017 to 2021
$3.2M
Investigating the mechanisms of CD44s splice isoform in breast cancer metastasisR01CA182467 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHENG, CHONGHUI · 2014 to 2018
$1.6M
Functional genetic variations in splicing regulationR01HG006264 · NHGRI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI XIAO, XINSHU GRACE · 2012 to 2016
$1.5M
Mechanisms of hnRNPM in Alternative Splicing Regulation During EMTR01GM110146 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHENG, CHONGHUI · 2014 to 2018
$1.5M
Alternative Splicing of Amyloid Precursor-Like Protein 2 during the Epithelial-Mesenchymal Transition and Cancer MetastasisF30CA196118 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI HARVEY, SAMUEL EMERSON · 2015 to 2018
$174k
NCI NIH HHS F30 CA196118NCI NIH HHS R01 CA182467NHGRI NIH HHS R01 HG006264NHGRI NIH HHS U01 HG009417NIGMS NIH HHS R01 GM110146
6 · The paper itself

Abstract

The epithelial-mesenchymal transition (EMT) is a fundamental developmental process that is abnormally activated in cancer metastasis. Dynamic changes in alternative splicing occur during EMT. ESRP1 and hnRNPM are splicing regulators that promote an epithelial splicing program and a mesenchymal splicing program, respectively. The functional relationships between these splicing factors in the genome scale remain elusive. Comparing alternative splicing targets of hnRNPM and ESRP1 revealed that they coregulate a set of cassette exon events, with the majority showing discordant splicing regulation. Discordant splicing events regulated by hnRNPM show a positive correlation with splicing during EMT; however, concordant events do not, indicating the role of hnRNPM in regulating alternative splicing during EMT is more complex than previously understood. Motif enrichment analysis near hnRNPM-ESRP1 coregulated exons identifies guanine-uridine rich motifs downstream from hnRNPM-repressed and ESRP1-enhanced exons, supporting a general model of competitive binding to these

Indexed as

Alternative SplicingGene Expression RegulationBinding SitesBreast NeoplasmsCell Line, TumorEpithelial-Mesenchymal TransitionExonsFemaleGene Expression Regulation, NeoplasticHeterogeneous-Nuclear Ribonucleoprotein Group MHumansNucleotide MotifsPrognosisProtein BindingReproducibility of ResultsRNA-Binding ProteinsESRP1 protein, humanHeterogeneous-Nuclear Ribonucleoprotein Group MRNA-Binding Proteinsalternative splicingEMTESRP1hnRNPMRNA binding proteins

Identifiers

PMID30042172
PMCPMC6140460
OpenAlexW2949626630

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.