Evidence map›Paper›PMID 30041612›Full record

ArticleBMC infectious diseases2018

Emergence of norovirus GII.P16-GII.2 strains in patients with acute gastroenteritis in Huzhou, China, 2016-2017.

Jiankang Han, Xiaofang Wu, Liping Chen, Yun Fu, Deshun Xu, Peng Zhang, Lei Ji

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. A Bibliometric Analysis of the Literature on Norovirus Disease from 1991-2021.International journal of environmental research and public health · 2022
    Article
  8. Article
  9. Epidemiology and evolution of Norovirus in China.Human vaccines & immunotherapeutics · 2021
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Norovirus Outbreak Surveillance, China, 2016-2018.Emerging infectious diseases · 2020
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Jiankang HanHuzhou Center for Disease Control and Prevention, 999 Changxing Road, Huzhou, 313000, Zhejiang, China.
Xiaofang WuHuzhou Center for Disease Control and Prevention, 999 Changxing Road, Huzhou, 313000, Zhejiang, China.
Liping ChenHuzhou Center for Disease Control and Prevention, 999 Changxing Road, Huzhou, 313000, Zhejiang, China.
Yun FuHuzhou Center for Disease Control and Prevention, 999 Changxing Road, Huzhou, 313000, Zhejiang, China.
Deshun XuHuzhou Center for Disease Control and Prevention, 999 Changxing Road, Huzhou, 313000, Zhejiang, China.
Peng ZhangHuzhou Center for Disease Control and Prevention, 999 Changxing Road, Huzhou, 313000, Zhejiang, China.
Lei JiHuzhou Center for Disease Control and Prevention, 999 Changxing Road, Huzhou, 313000, Zhejiang, China. jileichn@163.com.
Huzhou University · CN

Funding

Natural Science Foundation of Huzhou Science and Technology Bureau 2017YZ04Zhejiang Medical Science and Technology Program 2018RC015
6 · The paper itself

Abstract

backgroundIn late 2016, an uncommon recombinant NoV genotype called GII.P16-GII.2 caused a sharp increase in outbreaks of acute gastroenteritis in different countries of Asia and Europe, including China. However, we did not observe a drastic increase in sporadic norovirus cases in the winter of 2016 in Huzhou. Therefore, we investigate the prevalence and genetic diversity of NoVs in the sporadic acute gastroenteritis (AGE) cases from January 2016 to December 2017 in Huzhou City, Zhejiang, China.

methodsFrom January 2016 to December 2017, a total of 1001 specimens collected from patients with AGE were screened for NoV by real-time RT-PCR. Partial sequences of the RNA-dependent RNA polymerase (RdRp) and capsid gene of the positive samples were amplified by RT-PCR and sequenced. Genotypes of NoV were confirmed by online NoV typing tool and phylogenetic analysis. Complete VP1 sequences of GII.P16-GII.2 strains detected in this study were further obtained and subjected into sequence analysis.

resultsIn total, 204 (20.4%) specimens were identified as NoV-positive. GII genogroup accounted for most of the NoV-infected cases (98.0%, 200/204). NoV infection was found in all age groups tested (< 5, 5-15, 16-20, 21-30, 31-40, 41-50, 51-60, and >60 years), with the 5-15 year age group having the highest detection rate (17/49, 34.7%). Higher activity of NoV infection could be seen in winter-spring season. The predominant NoV genotypes have changed from GII.Pe-GII.4 Sydney2012 and GII.P17-GII.17 in 2016 to GII.P16-GII.2, GII.Pe-GII.4 Sydney2012 and GII.P17-GII.17 in 2017. Phylogenetic analyses revealed that 2016-2017 GII.P16-GII.2 strains were most closely related to Japan 2010-2012 cluster in VP1 region and no common mutations were found in the amino acids of the HBGA-binding sites and the predicted epitopes.

conclusionsWe report the emergence of GII.P16-GII.2 strains and characterize the molecular epidemiological patterns NoV infection between January 2016 and December 2017 in Huzhou. The predominant genotypes of NoV during our study period are diverse. VP1 amino acid sequences of 2016-2017 GII.P16-GII.2 strains remain static after one year of circulation.

Indexed as

Caliciviridae InfectionsGastroenteritisChinaGenotypeHumansMolecular EpidemiologyNorovirusAcute gastroenteritisGII.P16-GII.2Molecular epidemiologyNorovirus

Identifiers

PMID30041612
PMCPMC6056945
OpenAlexW2883924436

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.