Evidence map›Paper›PMID 30041293›Full record

ArticleIranian biomedical journal2019

The Inhibitory Effect of Mouse Gastric DNA on Amplification of Helicobacter pylori Genomic DNA in Quantitative PCR

Mehdi Alikhani, Ebrahim Shafaie, Esmat Mirabzadeh Ardakani, Maryam Esmaeili, Samaneh Saberi, Mojgan Hatefi, Marjan Mohammadi

Open access · diamondAbstract read
In one paragraph

Article in Iranian biomedical journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Rapid Detection ofACS omega · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Mehdi AlikhaniHPGC Research Group, Medical Biotechnology Department, Pasteur Institute of Iran, Tehran, Iran.
Ebrahim ShafaieHPGC Research Group, Medical Biotechnology Department, Pasteur Institute of Iran, Tehran, Iran.
Esmat Mirabzadeh ArdakaniAnimal Sciences Lab, Department of Molecular Medicine, Pasteur Institute of Iran, Tehran, Iran.
Maryam EsmaeiliHPGC Research Group, Medical Biotechnology Department, Pasteur Institute of Iran, Tehran, Iran.
Samaneh SaberiHPGC Research Group, Medical Biotechnology Department, Pasteur Institute of Iran, Tehran, Iran.
Mojgan HatefiHPGC Research Group, Medical Biotechnology Department, Pasteur Institute of Iran, Tehran, Iran.
Marjan MohammadiHPGC Research Group, Medical Biotechnology Department, Pasteur Institute of Iran, Tehran, Iran.
Pasteur Institute of Iran · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Quantitation of Helicobacter pylori (Hp) in the gastric tissue is essential for assessment of vaccination/therapeutic regimens. Materials & Results: Here, the inhibitory effect of mouse gastric DNA (MgDNA) on amplification of Hp genomic DNA (HpDNA) was evaluated by spiking HpDNA with serial dilutions of MgDNA, which yielded concentrations of >10 ng/µl and >0.63-10 ng/µl of MgDNA, as inhibition and interference zones, respectively. Mice were then inoculated with varying doses of Hp and assessed at the inhibition-free concentration of 0.63 ng/µl. The average Hp copy numbers per microgram of gastric tissue discriminated mice having received high vs. low dose inoculums (p < 0.001). Secondly, Hp copy numbers were quantitated in immunized mice, which demonstrated significantly lower numbers, in reference to controls (p = 0.006). Conclusion: Our method, bypassing the inhibition and/or interference imposed by MgDNA, was able to quantitate gastric tissue-colonizing Hp, segregating mice inoculated with low vs. high doses of Hp, as well as those immunized from controls.

Indexed as

Genome, BacterialAnimalsDNADNA, BacterialFemaleGene DosageHelicobacter pyloriMice, Inbred C57BLPlasmidsReal-Time Polymerase Chain ReactionReference StandardsStomachDNADNA, BacterialAmplificationInhibitionInterferenceQuantitative PCRStandard curve

Identifiers

PMID30041293
PMCPMC6462288
OpenAlexW2969351549

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.