Evidence map›Paper›PMID 30040854›Full record

ArticlePloS one2018

Behavior of blood plasma glycan features in bladder cancer.

Shadi Ferdosi, Thai H Ho, Erik P Castle, Melissa L Stanton, Chad R Borges

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Recognition of early and late stages of bladder cancer using metabolites and machine learning.Metabolomics : Official journal of the Metabolomic Society · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Shadi FerdosiSchool of Molecular Sciences, Arizona State University, Tempe, AZ, United States of America.
Thai H HoDivision of Hematology and Medical Oncology, Mayo Clinic, Phoenix, AZ, United States of America.ORCID 0000-0003-0023-2939
Erik P CastleDepartment of Urology, Mayo Clinic, Phoenix, AZ, United States of America.
Melissa L StantonDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Phoenix, AZ, United States of America.
Chad R BorgesSchool of Molecular Sciences, Arizona State University, Tempe, AZ, United States of America.ORCID 0000-0002-8122-3438
Arizona State University · USMayo Clinic Hospital · USWinnMed · US

Funding

Validation and Advanced Development of Glycan Node Analysis in Lung Cancer ResearchR33CA191110 · NCI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI BORGES, CHAD R · 2015 to 2016
$558k
NCI NIH HHS R33 CA191110
6 · The paper itself

Abstract

Despite systemic therapy and cystectomy, bladder cancer is characterized by a high recurrence rate. Serum glycomics represents a promising source of prognostic markers for monitoring patients. Our approach, which we refer to as "glycan node analysis", constitutes the first example of molecularly "bottom-up" glycomics. It is based on a global glycan methylation analysis procedure that is applied to whole blood plasma/serum. The approach detects and quantifies partially methylated alditol acetates arising from unique glycan features such as α2-6 sialylation, β1-4 branching, and core fucosylation that have been pooled together from across all intact glycans within a sample into a single GC-MS chromatographic peak. We applied this method to 122 plasma samples from former and current bladder cancer patients (n = 72 former cancer patients with currently no evidence of disease (NED); n = 38 non-muscle invasive bladder cancer (NMIBC) patients; and n = 12 muscle invasive bladder cancer (MIBC) patients) along with plasma from 30 certifiably healthy living kidney donors. Markers for α2-6 sialylation, β1-4 branching, β1-6 branching, and outer-arm fucosylation were able to separate current and former (NED) cases from certifiably healthy controls (ROC curve c-statistics ~ 0.80); but NED, NMIBC, and MIBC were not distinguished from one another. Based on the unexpectedly high levels of these glycan nodes in the NED patients, we hypothesized that recurrence of this disease could be predicted by some of the elevated glycan features. Indeed, α2-6 sialylation and β1-6 branching were able to predict recurrence from the NED state using a Cox proportional hazards regression model adjusted for age, gender, and time from cancer. The levels of these two glycan features were correlated to C-reactive protein concentration, an inflammation marker and known prognostic indicator for bladder cancer, further strengthening the link between inflammation and abnormal plasma protein glycosylation.

Indexed as

AgedAge FactorsBiomarkers, TumorHumansKidney TransplantationMiddle AgedNeoplasm InvasivenessPolysaccharidesPrognosisROC CurveUrinary Bladder NeoplasmsBiomarkers, TumorPolysaccharides

Identifiers

PMID30040854
PMCPMC6057681
OpenAlexW2883769491

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.