Evidence map›Paper›PMID 30040824›Full record

ArticlePloS one2018

Production of α-1,3-L-arabinofuranosidase active on substituted xylan does not improve compost degradation by Agaricus bisporus.

Aurin M Vos, Edita Jurak, Peter de Gijsel, Robin A Ohm, Bernard Henrissat, Luis G Lugones, Mirjam A Kabel, Han A B Wösten

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Critical Factors Involved in Primordia Building inMolecules (Basel, Switzerland) · 2020
    Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Aurin M VosMicrobiology, Department of Biology, Utrecht University, Utrecht, The Netherlands.ORCID 0000-0001-9168-0248
Edita JurakLaboratory of Food Chemistry, Wageningen University and Research, Wageningen, The Netherlands.
Peter de GijselLaboratory of Food Chemistry, Wageningen University and Research, Wageningen, The Netherlands.
Robin A OhmMicrobiology, Department of Biology, Utrecht University, Utrecht, The Netherlands.
Bernard HenrissatArchitecture et Fonction des Macromolécules Biologiques, Centre National de la Recherche Scientifique, Aix-Marseille Université, Marseille, France.
Luis G LugonesMicrobiology, Department of Biology, Utrecht University, Utrecht, The Netherlands.
Mirjam A KabelLaboratory of Food Chemistry, Wageningen University and Research, Wageningen, The Netherlands.
Han A B WöstenMicrobiology, Department of Biology, Utrecht University, Utrecht, The Netherlands.
Utrecht University · NLWageningen University & Research · NLAix-Marseille Université · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Agaricus bisporus consumes carbohydrates contained in wheat straw based compost used for commercial mushroom production. Double substituted arabinoxylan is part of the ~40% of the compost polysaccharides that are not degraded by A. bisporus during its growth and development. Genes encoding α-1,3-l-arabinofuranosidase (AXHd3) enzymes that act on xylosyl residues doubly substituted with arabinosyl residues are absent in this mushroom forming fungus. Here, the AXHd3 encoding hgh43 gene of Humicola insolens was expressed in A. bisporus with the aim to improve its substrate utilization and mushroom yield. Transformants secreted active AXHd3 in compost as shown by the degradation of double substituted arabinoxylan oligomers in an in vitro assay. However, carbohydrate composition and degree of arabinosyl substitution of arabinoxylans were not affected in compost possibly due to inaccessibility of the doubly substituted xylosyl residues.

Indexed as

CompostingAgaricusCarbohydrate MetabolismFungal ProteinsGlycoside HydrolasesOrganisms, Genetically ModifiedSordarialesTransformation, GeneticXylansalpha-N-arabinofuranosidaseFungal ProteinsGlycoside HydrolasesXylans

Identifiers

PMID30040824
PMCPMC6057652
OpenAlexW2885009331

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.