Evidence map›Paper›PMID 30040241›Full record

ArticleCurrent protocols in toxicology2018

Newly Revised Quantitative PCR-Based Assay for Mitochondrial and Nuclear DNA Damage.

Laurie H Sanders, Jeremy P Rouanet, Evan H Howlett, Tess C Leuthner, John P Rooney, J Timothy Greenamyre, Joel N Meyer

Abstract read
In one paragraph

Article in Current protocols in toxicology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Laurie H SandersPittsburgh Institute for Neurodegenerative Diseases and Department of Neurology, University of Pittsburgh, Pittsburgh, Pennsylvania.
Jeremy P RouanetDepartment of Neurology, Duke University Medical Center, Durham, North Carolina.
Evan H HowlettPittsburgh Institute for Neurodegenerative Diseases and Department of Neurology, University of Pittsburgh, Pittsburgh, Pennsylvania.
Tess C LeuthnerNicholas School of the Environment, Duke University, Durham, North Carolina.
John P RooneyNicholas School of the Environment, Duke University, Durham, North Carolina.
J Timothy GreenamyrePittsburgh Institute for Neurodegenerative Diseases and Department of Neurology, University of Pittsburgh, Pittsburgh, Pennsylvania.
Joel N MeyerNicholas School of the Environment, Duke University, Durham, North Carolina.

Funding

Zebrafish as a Detector of Organophosphate ExposureP42ES010356 · NIEHS · DUKE UNIVERSITY · PI EDWARD D LEVIN · 2000 to 2026
$56.2M
VARIABILITY, STABILITY & SMOOTHNESS OF WALKINGP30AG024827 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JENNIFER S BRACH · 2004 to 2026
$28.6M
Duke University Program in Environmental HealthT32ES021432 · NIEHS · DUKE UNIVERSITY · PI Akhenaton-Andrew Dhafir Jones, Joel Newman Meyer · 2013 to 2026
$4.0M
Does exposure to mitochondrial toxicants during germ cell development result in lifelong alterations in mitochondrial function mediated by epigenetic changes?R01ES028218 · NIEHS · DUKE UNIVERSITY · PI MEYER, JOEL NEWMAN · 2017 to 2021
$1.5M
NIA NIH HHS P30 AG024827NIEHS NIH HHS P42 ES010356NIEHS NIH HHS R01 ES028218NIEHS NIH HHS T32 ES021432
6 · The paper itself

Abstract

Given the crucial role of DNA damage in human health and disease, it is important to be able to accurately measure both mitochondrial and nuclear DNA damage. This article describes a method based on a long-amplicon quantitative PCR-based assay that does not require a separate mitochondrial isolation step, which can often be labor-intensive and generate artifacts. The detailed basic protocol presented here is newly revised, with particular attention to application in Homo sapiens, Rattus norvegicus, and Caenorhabditis elegans resulting from changes in availability of PCR reagents. Optimized extraction support protocols are also described for high-quality DNA from multiple rat tissues for which these procedures had not previously been described. © 2018 by John Wiley & Sons, Inc.

Indexed as

AnimalsCaenorhabditis elegansCell NucleusDNADNA DamageDNA, MitochondrialHumansPolymerase Chain ReactionRatsReal-Time Polymerase Chain ReactionDNADNA, Mitochondrialmitochondrial DNA damageneurodegenerationnuclear DNA damageParkinson's diseaseQPCR-based assay

Identifiers

PMID30040241
PMCPMC6060631

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.