Evidence map›Paper›PMID 30040188›Full record

ArticleCurrent protocols in cell biology2018

Elimination of Mitochondrial DNA from Mammalian Cells.

Natalya Khozhukhar, Domenico Spadafora, Yelitza Rodriguez, Mikhail Alexeyev

Open access · greenAbstract read
In one paragraph

Article in Current protocols in cell biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

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  5. Mitochondria regulate MR1 protein expression and produce self-metabolites that activate MR1-restricted T cells.Proceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Natalya KhozhukharDepartment of Physiology and Cell Biology, University of South Alabama, Mobile, Alabama.
Domenico SpadaforaFlow Cytometry Core Lab, University of South Alabama, Mobile, Alabama.
Yelitza RodriguezDepartment of Physiology and Cell Biology, University of South Alabama, Mobile, Alabama.
Mikhail AlexeyevDepartment of Physiology and Cell Biology, University of South Alabama, Mobile, Alabama.
University of South Alabama · US

Funding

T-type Calcium Channels and von Willebrand Factor ReleaseP01HL066299 · NHLBI · UNIVERSITY OF SOUTH ALABAMA · PI LEAVESLEY, SILAS JOSIAH · 2001 to 2022
$34.6M
Mouse models for mitochondrial disorders caused by mutations in mtDNAR01OD010944 · OD · UNIVERSITY OF SOUTH ALABAMA · PI ALEXEYEV, MIKHAIL F., WALLACE, DOUGLAS C · 2012 to 2020
$2.6M
NHLBI NIH HHS P01 HL066299NIH HHS R01 OD010944
6 · The paper itself

Abstract

To cope with DNA damage, mitochondria developed a pathway by which severely damaged or unrepairable mitochondrial DNA (mtDNA) molecules are abandoned and degraded, and new molecules are resynthesized using intact templates, if available. In this unit, we describe a method that harnesses this pathway to completely eliminate mtDNA from mammalian cells by transiently overexpressing the Y147A mutant of human uracil-N-glycosylase (mUNG1). We also provide an alternate protocol for mtDNA depletion using combined treatment with ethidium bromide (EtBr) and dideoxycytidine (ddC). Support protocols detail approaches for (1) genotyping ρ° cells of human, mouse, and rat origin by PCR; (2) quantitation of mtDNA by quantitative PCR (qPCR); and (3) preparation of calibrator plasmids for mtDNA quantitation. © 2018 by John Wiley & Sons, Inc.

Indexed as

AnimalsCalibrationCell LineCellsCytological TechniquesDNA, MitochondrialEthidiumGene DosageHumansMammalsMicePolymerase Chain ReactionUracil-DNA GlycosidaseZalcitabineDNA, MitochondrialEthidiumUracil-DNA GlycosidaseZalcitabinecybridsmtDNAmtDNA copy numbermtDNA damageρ° cells

Identifiers

PMID30040188
PMCPMC6078498
OpenAlexW2797677578

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.