Evidence map›Paper›PMID 30039798›Full record

ArticleeLife2018

Antibiotic-induced acceleration of type 1 diabetes alters maturation of innate intestinal immunity.

Xue-Song Zhang, Jackie Li, Kimberly A Krautkramer, Michelle Badri, Thomas Battaglia, Timothy C Borbet, Hyunwook Koh, Sandy Ng, Rachel A Sibley, Yuanyuan Li and 19 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed, 1 pooled it
8.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 1 synthesis or guideline pooled it, 106 citations in OpenAlex.

  1. Pooled it
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  18. Biomolecular Actions by Intestinal Endotoxemia in Metabolic Syndrome.International journal of molecular sciences · 2024
    Review
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  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 7 institutions in 2 countries.

Xue-Song ZhangDepartment of Medicine, New York University Langone Medical Center, New York, United States.ORCID https://orcid.org/0000-0001-5080-0098
Jackie LiDepartment of Medicine, New York University Langone Medical Center, New York, United States.ORCID http://orcid.org/0000-0002-1376-6692
Kimberly A KrautkramerDepartment of Biomolecular Chemistry, Wisconsin Institute for Discovery, University of Wisconsin School of Medicine and Public Health, Madison, United States.
Michelle BadriDepartment of Medicine, New York University Langone Medical Center, New York, United States.
Thomas BattagliaDepartment of Medicine, New York University Langone Medical Center, New York, United States.
Timothy C BorbetDepartment of Medicine, New York University Langone Medical Center, New York, United States.
Hyunwook KohDepartment of Population Health, New York University Langone Medical Center, New York, United States.
Sandy NgDepartment of Medicine, New York University Langone Medical Center, New York, United States.
Rachel A SibleyDepartment of Medicine, New York University Langone Medical Center, New York, United States.
Yuanyuan LiNutrition Research Institute, University of North Carolina at Chapel Hill School of Public Health, Kannapolis, United States.
Wimal PathmasiriNutrition Research Institute, University of North Carolina at Chapel Hill School of Public Health, Kannapolis, United States.
Shawn JindalDepartment of Medicine, New York University Langone Medical Center, New York, United States.
Robin R Shields-CutlerComputer Science and Engineering, BioTechnology Institute, University of Minnesota, St. Paul, United States.
Ben HillmannComputer Science and Engineering, BioTechnology Institute, University of Minnesota, St. Paul, United States.
Gabriel A Al-GhalithComputer Science and Engineering, BioTechnology Institute, University of Minnesota, St. Paul, United States.
Victoria E RuizDepartment of Medicine, New York University Langone Medical Center, New York, United States.
Alexandra LivanosDepartment of Medicine, New York University Langone Medical Center, New York, United States.
Angélique B van 't WoutJanssen Prevention Center London, Janssen Pharmaceutical Companies of Johnson and Johnson, London, United Kingdom.
Nabeetha NagalingamJanssen Prevention Center London, Janssen Pharmaceutical Companies of Johnson and Johnson, London, United Kingdom.
Arlin B RogersDepartment of Biomedical Sciences, Cummings School of Veterinary Medicine, Tufts University, North Grafton, United States.
Susan Jenkins SumnerNutrition Research Institute, University of North Carolina at Chapel Hill School of Public Health, Kannapolis, United States.
Dan KnightsComputer Science and Engineering, BioTechnology Institute, University of Minnesota, St. Paul, United States.
John M DenuDepartment of Biomolecular Chemistry, Wisconsin Institute for Discovery, University of Wisconsin School of Medicine and Public Health, Madison, United States.
Huilin LiDepartment of Population Health, New York University Langone Medical Center, New York, United States.
Kelly V RugglesDepartment of Medicine, New York University Langone Medical Center, New York, United States.
Richard BonneauCenter for Data Science, New York University, New York, United States.
R Anthony WilliamsonJanssen Prevention Center London, Janssen Pharmaceutical Companies of Johnson and Johnson, London, United Kingdom.
Marcus RauchJanssen Prevention Center London, Janssen Pharmaceutical Companies of Johnson and Johnson, London, United Kingdom.
Martin J BlaserDepartment of Medicine, New York University Langone Medical Center, New York, United States.ORCID http://orcid.org/0000-0003-2447-2443
NYU Langone Health · USJanssen (United Kingdom) · GBUniversity of Minnesota · USUniversity of North Carolina at Chapel Hill · USWisconsin Institutes for Discovery · USNew York University · USTufts University · US

Funding

MEDICAL SCIENTIST TRAININGT32GM007308 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PHILIPS, MARK REID · 1985 to 2019
$23.2M
INTEGRATED TRAINING FOR PHYSICIAN-SCIENTISTST32GM008692 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BURKARD, MARK E · 1998 to 2020
$10.3M
TRAINING IN NUTRITIONT32DK007665 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI GUY E GROBLEWSKI, Chi- Liang Eric Yen · 1993 to 2026
$9.2M
Molecular mechanisms of histone modification - Alzheimer’s supplement NOT-AG-18-008R37GM059785 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI DENU, JOHN M · 2013 to 2022
$3.7M
SHORT-TERM TRAINING: STUDENTS IN HEALTH PROFESSIONAL SCHT35DK007421 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI RAMASAMY, RAVICHANDRAN · 1985 to 2023
$2.5M
Novel Statistical Methods in Analyzing Microbiome Data for Longitudinal StudyR01DK110014 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI LI, HUILIN · 2016 to 2019
$1.5M
Interactions between gut microbial metabolism and host epigenomeF30DK108494 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI KRAUTKRAMER, KIMBERLY ANN · 2016 to 2018
$93k
Fondation Leducq -33.17CVD01Janssen Labs London 15-A0-00-00-0039-29-01Janssen Research and Development 15-A0-00-00-0039-29-01NIDDK NIH HHS F30 DK108494NIDDK NIH HHS R01 DK110014NIDDK NIH HHS T32 DK007665NIDDK NIH HHS T35 DK007421NIGMS NIH HHS R37 GM059785NIGMS NIH HHS T32 GM007308NIGMS NIH HHS T32 GM008692NIH HHS 5T35DK007421NIH HHS F30DK108494NIH HHS R01DK110014NIH HHS R37GM059785
6 · The paper itself

Abstract

The early-life intestinal microbiota plays a key role in shaping host immune system development. We found that a single early-life antibiotic course (1PAT) accelerated type 1 diabetes (T1D) development in male NOD mice. The single course had deep and persistent effects on the intestinal microbiome, leading to altered cecal, hepatic, and serum metabolites. The exposure elicited sex-specific effects on chromatin states in the ileum and liver and perturbed ileal gene expression, altering normal maturational patterns. The global signature changes included specific genes controlling both innate and adaptive immunity. Microbiome analysis revealed four taxa each that potentially protect against or accelerate T1D onset, that were linked in a network model to specific differences in ileal gene expression. This simplified animal model reveals multiple potential pathways to understand pathogenesis by which early-life gut microbiome perturbations alter a global suite of intestinal responses, contributing to the accelerated and enhanced T1D development.

Indexed as

Adaptive ImmunityAnimalsAnti-Bacterial AgentsDiabetes Mellitus, Type 1FemaleGastrointestinal MicrobiomeIleumImmunity, InnateIntestinesMiceMice, Inbred NODMicrobiotaAnti-Bacterial Agentsanimal modelsautoimmunegene expressionimmune maturationimmunologyinfectious diseaseinflammationmicrobiologymicrobiomemouseNOD mice

Identifiers

PMID30039798
PMCPMC6085123
OpenAlexW2884032422

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.