Evidence map›Paper›PMID 30039465›Full record

ReviewPlant cell reports2018

The plastid genome as a chassis for synthetic biology-enabled metabolic engineering: players in gene expression.

Heidi S Schindel, Agnieszka A Piatek, C Neal Stewart, Scott C Lenaghan

Abstract readReview
PubMed Publisher
In one paragraph

Review in Plant cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. The Chloroplast ofInternational journal of molecular sciences · 2021
    Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Heidi S SchindelDepartment of Food Science, University of Tennessee, 2600 River Dr., Knoxville, TN, 37996-4561, USA.
Agnieszka A PiatekDepartment of Plant Sciences, University of Tennessee, 2431 Joe Johnson Dr., Knoxville, TN, 37996-4561, USA.
C Neal StewartDepartment of Plant Sciences, University of Tennessee, 2431 Joe Johnson Dr., Knoxville, TN, 37996-4561, USA. nealstewart@utk.edu.ORCID http://orcid.org/0000-0003-3026-9193
Scott C LenaghanDepartment of Food Science, University of Tennessee, 2600 River Dr., Knoxville, TN, 37996-4561, USA. slenagha@utk.edu.
University of Tennessee at Knoxville · US

Funding

Advanced Research Projects Agency DE-AR000660Defense Advanced Research Projects Agency D17AC00016
6 · The paper itself

Abstract

Owing to its small size, prokaryotic-like molecular genetics, and potential for very high transgene expression, the plastid genome (plastome) is an attractive plant synthetic biology chassis for metabolic engineering. The plastome exists as a homogenous, compact, multicopy genome within multiple-specialized differentiated plastid compartments. Because of this multiplicity, transgenes can be highly expressed. For coordinated gene expression, it is the prokaryotic molecular genetics that is an especially attractive feature. Multiple genes in a metabolic pathway can be expressed in a series of operons, which are regulated at the transcriptional and translational levels with cross talk from the plant's nuclear genome. Key features of each regulatory level are reviewed, as well as some examples of plastome-enabled metabolic engineering. We also speculate about the transformative future of plastid-based synthetic biology to enable metabolic engineering in plants as well as the problems that must be solved before routine plastome-enabled synthetic circuits can be installed.

Indexed as

Genome, Plastid3' Untranslated Regions5' Untranslated RegionsGene Expression RegulationGenome, PlantMetabolic EngineeringPromoter Regions, GeneticSynthetic BiologyTransgenes3' Untranslated Regions5' Untranslated RegionsGenomic cross talkMetabolic engineeringPromotersSynthetic biologyUTRs

Identifiers

PMID30039465
OpenAlexW2883624885

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.